Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SOD3 (superoxide dismutase 3)

Identity

Alias_symbol (synonym)EC-SOD
Other alias
HGNC (Hugo) SOD3
LocusID (NCBI) 6649
Atlas_Id 49773
Location 4p15.2  [Link to chromosome band 4p15]
Location_base_pair Starts at 24795463 and ends at 24800845 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SOD3   11181
Cards
Entrez_Gene (NCBI)SOD3  6649  superoxide dismutase 3
AliasesEC-SOD
GeneCards (Weizmann)SOD3
Ensembl hg19 (Hinxton)ENSG00000109610 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109610 [Gene_View]  chr4:24795463-24800845 [Contig_View]  SOD3 [Vega]
ICGC DataPortalENSG00000109610
TCGA cBioPortalSOD3
AceView (NCBI)SOD3
Genatlas (Paris)SOD3
WikiGenes6649
SOURCE (Princeton)SOD3
Genetics Home Reference (NIH)SOD3
Genomic and cartography
GoldenPath hg38 (UCSC)SOD3  -     chr4:24795463-24800845 +  4p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SOD3  -     4p15.2   [Description]    (hg19-Feb_2009)
EnsemblSOD3 - 4p15.2 [CytoView hg19]  SOD3 - 4p15.2 [CytoView hg38]
Mapping of homologs : NCBISOD3 [Mapview hg19]  SOD3 [Mapview hg38]
OMIM185490   
Gene and transcription
Genbank (Entrez)AK313935 BC014418 BI757365 BM677660 CR541853
RefSeq transcript (Entrez)NM_003102
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SOD3
Cluster EST : UnigeneHs.2420 [ NCBI ]
CGAP (NCI)Hs.2420
Alternative Splicing GalleryENSG00000109610
Gene ExpressionSOD3 [ NCBI-GEO ]   SOD3 [ EBI - ARRAY_EXPRESS ]   SOD3 [ SEEK ]   SOD3 [ MEM ]
Gene Expression Viewer (FireBrowse)SOD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6649
GTEX Portal (Tissue expression)SOD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP08294   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP08294  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP08294
Splice isoforms : SwissVarP08294
Catalytic activity : Enzyme1.15.1.1 [ Enzyme-Expasy ]   1.15.1.11.15.1.1 [ IntEnz-EBI ]   1.15.1.1 [ BRENDA ]   1.15.1.1 [ KEGG ]   
PhosPhoSitePlusP08294
Domaine pattern : Prosite (Expaxy)SOD_CU_ZN_1 (PS00087)    SOD_CU_ZN_2 (PS00332)   
Domains : Interpro (EBI)SOD_Cu/Zn_BS    SOD_Cu_Zn_dom   
Domain families : Pfam (Sanger)Sod_Cu (PF00080)   
Domain families : Pfam (NCBI)pfam00080   
Conserved Domain (NCBI)SOD3
DMDM Disease mutations6649
Blocks (Seattle)SOD3
PDB (SRS)2JLP   
PDB (PDBSum)2JLP   
PDB (IMB)2JLP   
PDB (RSDB)2JLP   
Structural Biology KnowledgeBase2JLP   
SCOP (Structural Classification of Proteins)2JLP   
CATH (Classification of proteins structures)2JLP   
SuperfamilyP08294
Human Protein AtlasENSG00000109610
Peptide AtlasP08294
HPRD01708
IPIIPI00027827   
Protein Interaction databases
DIP (DOE-UCLA)P08294
IntAct (EBI)P08294
FunCoupENSG00000109610
BioGRIDSOD3
STRING (EMBL)SOD3
ZODIACSOD3
Ontologies - Pathways
QuickGOP08294
Ontology : AmiGOresponse to reactive oxygen species  response to hypoxia  superoxide dismutase activity  superoxide dismutase activity  copper ion binding  protein binding  extracellular region  extracellular space  nucleus  cytoplasm  Golgi lumen  heparin binding  zinc ion binding  removal of superoxide radicals  extracellular matrix  response to copper ion  oxidation-reduction process  extracellular exosome  
Ontology : EGO-EBIresponse to reactive oxygen species  response to hypoxia  superoxide dismutase activity  superoxide dismutase activity  copper ion binding  protein binding  extracellular region  extracellular space  nucleus  cytoplasm  Golgi lumen  heparin binding  zinc ion binding  removal of superoxide radicals  extracellular matrix  response to copper ion  oxidation-reduction process  extracellular exosome  
Pathways : BIOCARTAThe IGF-1 Receptor and Longevity [Genes]   
NDEx NetworkSOD3
Atlas of Cancer Signalling NetworkSOD3
Wikipedia pathwaysSOD3
Orthology - Evolution
OrthoDB6649
GeneTree (enSembl)ENSG00000109610
Phylogenetic Trees/Animal Genes : TreeFamSOD3
HOVERGENP08294
HOGENOMP08294
Homologs : HomoloGeneSOD3
Homology/Alignments : Family Browser (UCSC)SOD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSOD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SOD3
dbVarSOD3
ClinVarSOD3
1000_GenomesSOD3 
Exome Variant ServerSOD3
ExAC (Exome Aggregation Consortium)SOD3 (select the gene name)
Genetic variants : HAPMAP6649
Genomic Variants (DGV)SOD3 [DGVbeta]
DECIPHERSOD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSOD3 
Mutations
ICGC Data PortalSOD3 
TCGA Data PortalSOD3 
Broad Tumor PortalSOD3
OASIS PortalSOD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSOD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSOD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SOD3
DgiDB (Drug Gene Interaction Database)SOD3
DoCM (Curated mutations)SOD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SOD3 (select a term)
intoGenSOD3
Cancer3DSOD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM185490   
Orphanet
MedgenSOD3
Genetic Testing Registry SOD3
NextProtP08294 [Medical]
TSGene6649
GENETestsSOD3
Target ValidationSOD3
Huge Navigator SOD3 [HugePedia]
snp3D : Map Gene to Disease6649
BioCentury BCIQSOD3
ClinGenSOD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6649
Chemical/Pharm GKB GenePA36018
Clinical trialSOD3
Miscellaneous
canSAR (ICR)SOD3 (select the gene name)
Probes
Litterature
PubMed172 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSOD3
EVEXSOD3
GoPubMedSOD3
iHOPSOD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:15:20 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.