Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SOGA1 (suppressor of glucose, autophagy associated 1)

Identity

Alias (NCBI)C20orf117
KIAA0889
SOGA
HGNC (Hugo) SOGA1
HGNC Alias symbdJ132F21.1
FLJ44670
SOGA
HGNC Alias namesuppressor of glucose by autophagy
 suppressor of glucose from autophagy
HGNC Previous nameC20orf117
 KIAA0889
HGNC Previous namechromosome 20 open reading frame 117
 KIAA0889
LocusID (NCBI) 140710
Atlas_Id 74067
Location 20q11.23  [Link to chromosome band 20q11]
Location_base_pair Starts at 36777442 and ends at 36859873 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
B2M (15q21.1) / SOGA1 (20q11.23)PALM2 (9q31.3) / SOGA1 (20q11.23)SMARCC2 (12q13.2) / SOGA1 (20q11.23)
SOGA1 (20q11.23) / RPS6KA5 (14q32.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(14;20)(q32;q11) SOGA1/RPS6KA5

External links

Nomenclature
HGNC (Hugo)SOGA1   16111
Cards
Entrez_Gene (NCBI)SOGA1    suppressor of glucose, autophagy associated 1
AliasesC20orf117; KIAA0889; SOGA
GeneCards (Weizmann)SOGA1
Ensembl hg19 (Hinxton)ENSG00000149639 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149639 [Gene_View]  ENSG00000149639 [Sequence]  chr20:36777442-36859873 [Contig_View]  SOGA1 [Vega]
ICGC DataPortalENSG00000149639
TCGA cBioPortalSOGA1
AceView (NCBI)SOGA1
Genatlas (Paris)SOGA1
SOURCE (Princeton)SOGA1
Genetics Home Reference (NIH)SOGA1
Genomic and cartography
GoldenPath hg38 (UCSC)SOGA1  -     chr20:36777442-36859873 -  20q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SOGA1  -     20q11.23   [Description]    (hg19-Feb_2009)
GoldenPathSOGA1 - 20q11.23 [CytoView hg19]  SOGA1 - 20q11.23 [CytoView hg38]
ImmunoBaseENSG00000149639
genome Data Viewer NCBISOGA1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB020696 AK022023 AK057056 AK094762 AK126630
RefSeq transcript (Entrez)NM_080627 NM_152257 NM_199181
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SOGA1
Alternative Splicing GalleryENSG00000149639
Gene ExpressionSOGA1 [ NCBI-GEO ]   SOGA1 [ EBI - ARRAY_EXPRESS ]   SOGA1 [ SEEK ]   SOGA1 [ MEM ]
Gene Expression Viewer (FireBrowse)SOGA1 [ Firebrowse - Broad ]
GenevisibleExpression of SOGA1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140710
GTEX Portal (Tissue expression)SOGA1
Human Protein AtlasENSG00000149639-SOGA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94964   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94964  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94964
Splice isoforms : SwissVarO94964
PhosPhoSitePlusO94964
Domains : Interpro (EBI)DUF4482    SOGA   
Domain families : Pfam (Sanger)DUF4482 (PF14818)    SOGA (PF11365)   
Domain families : Pfam (NCBI)pfam14818    pfam11365   
Conserved Domain (NCBI)SOGA1
Blocks (Seattle)SOGA1
SuperfamilyO94964
Human Protein Atlas [tissue]ENSG00000149639-SOGA1 [tissue]
Peptide AtlasO94964
HPRD11116
IPIIPI00915294   IPI00797771   IPI00022274   IPI00942898   IPI00977449   
Protein Interaction databases
DIP (DOE-UCLA)O94964
IntAct (EBI)O94964
BioGRIDSOGA1
STRING (EMBL)SOGA1
ZODIACSOGA1
Ontologies - Pathways
QuickGOO94964
Ontology : AmiGOmolecular_function  extracellular space  extracellular space  insulin receptor signaling pathway  insulin receptor signaling pathway  regulation of autophagy  negative regulation of gluconeogenesis  extracellular exosome  
Ontology : EGO-EBImolecular_function  extracellular space  extracellular space  insulin receptor signaling pathway  insulin receptor signaling pathway  regulation of autophagy  negative regulation of gluconeogenesis  extracellular exosome  
NDEx NetworkSOGA1
Atlas of Cancer Signalling NetworkSOGA1
Wikipedia pathwaysSOGA1
Orthology - Evolution
OrthoDB140710
GeneTree (enSembl)ENSG00000149639
Phylogenetic Trees/Animal Genes : TreeFamSOGA1
HOGENOMO94964
Homologs : HomoloGeneSOGA1
Homology/Alignments : Family Browser (UCSC)SOGA1
Gene fusions - Rearrangements
Fusion : QuiverSOGA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSOGA1 [hg38]
dbVarSOGA1
ClinVarSOGA1
MonarchSOGA1
1000_GenomesSOGA1 
Exome Variant ServerSOGA1
GNOMAD BrowserENSG00000149639
Varsome BrowserSOGA1
Genomic Variants (DGV)SOGA1 [DGVbeta]
DECIPHERSOGA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSOGA1 
Mutations
ICGC Data PortalSOGA1 
TCGA Data PortalSOGA1 
Broad Tumor PortalSOGA1
OASIS PortalSOGA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSOGA1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSOGA1
Mutations and Diseases : HGMDSOGA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SOGA1
DgiDB (Drug Gene Interaction Database)SOGA1
DoCM (Curated mutations)SOGA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SOGA1 (select a term)
intoGenSOGA1
Cancer3DSOGA1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSOGA1
MedgenSOGA1
Genetic Testing Registry SOGA1
NextProtO94964 [Medical]
GENETestsSOGA1
Target ValidationSOGA1
Huge Navigator SOGA1 [HugePedia]
ClinGenSOGA1
Clinical trials, drugs, therapy
MyCancerGenomeSOGA1
Protein Interactions : CTD
Pharm GKB GenePA25657
Clinical trialSOGA1
Miscellaneous
canSAR (ICR)SOGA1 (select the gene name)
HarmonizomeSOGA1
DataMed IndexSOGA1
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSOGA1
EVEXSOGA1
GoPubMedSOGA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:29:53 CET 2020
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