Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SOGA3 (SOGA family member 3)

Identity

Alias_namesC6orf174
chromosome 6 open reading frame 174
Alias_symbol (synonym)dJ403A15.3
Other alias
HGNC (Hugo) SOGA3
LocusID (NCBI) 387104
Atlas_Id 74068
Location 6q22.33  [Link to chromosome band 6q22]
Location_base_pair Starts at 127438406 and ends at 127519355 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SOGA3   21494
Cards
Entrez_Gene (NCBI)SOGA3  387104  SOGA family member 3
AliasesC6orf174; dJ403A15.3
GeneCards (Weizmann)SOGA3
Ensembl hg19 (Hinxton)ENSG00000255330 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255330 [Gene_View]  ENSG00000255330 [Sequence]  chr6:127438406-127519355 [Contig_View]  SOGA3 [Vega]
ICGC DataPortalENSG00000255330
TCGA cBioPortalSOGA3
AceView (NCBI)SOGA3
Genatlas (Paris)SOGA3
WikiGenes387104
SOURCE (Princeton)SOGA3
Genetics Home Reference (NIH)SOGA3
Genomic and cartography
GoldenPath hg38 (UCSC)SOGA3  -     chr6:127438406-127519355 -  6q22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SOGA3  -     6q22.33   [Description]    (hg19-Feb_2009)
EnsemblSOGA3 - 6q22.33 [CytoView hg19]  SOGA3 - 6q22.33 [CytoView hg38]
Mapping of homologs : NCBISOGA3 [Mapview hg19]  SOGA3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091416 AK096490 AK309423 BC020441 BC127760
RefSeq transcript (Entrez)NM_001012279
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SOGA3
Cluster EST : UnigeneHs.319247 [ NCBI ]
CGAP (NCI)Hs.319247
Alternative Splicing GalleryENSG00000255330
Gene ExpressionSOGA3 [ NCBI-GEO ]   SOGA3 [ EBI - ARRAY_EXPRESS ]   SOGA3 [ SEEK ]   SOGA3 [ MEM ]
Gene Expression Viewer (FireBrowse)SOGA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387104
GTEX Portal (Tissue expression)SOGA3
Human Protein AtlasENSG00000255330-SOGA3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TF21   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TF21  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TF21
Splice isoforms : SwissVarQ5TF21
PhosPhoSitePlusQ5TF21
Domains : Interpro (EBI)SOGA   
Domain families : Pfam (Sanger)SOGA (PF11365)   
Domain families : Pfam (NCBI)pfam11365   
Conserved Domain (NCBI)SOGA3
DMDM Disease mutations387104
Blocks (Seattle)SOGA3
SuperfamilyQ5TF21
Human Protein Atlas [tissue]ENSG00000255330-SOGA3 [tissue]
Peptide AtlasQ5TF21
HPRD16661
IPIIPI00647205   IPI00983321   IPI00978854   
Protein Interaction databases
DIP (DOE-UCLA)Q5TF21
IntAct (EBI)Q5TF21
FunCoupENSG00000255330
BioGRIDSOGA3
STRING (EMBL)SOGA3
ZODIACSOGA3
Ontologies - Pathways
QuickGOQ5TF21
Ontology : AmiGOextracellular space  regulation of autophagy  integral component of membrane  
Ontology : EGO-EBIextracellular space  regulation of autophagy  integral component of membrane  
NDEx NetworkSOGA3
Atlas of Cancer Signalling NetworkSOGA3
Wikipedia pathwaysSOGA3
Orthology - Evolution
OrthoDB387104
GeneTree (enSembl)ENSG00000255330
Phylogenetic Trees/Animal Genes : TreeFamSOGA3
HOVERGENQ5TF21
HOGENOMQ5TF21
Homologs : HomoloGeneSOGA3
Homology/Alignments : Family Browser (UCSC)SOGA3
Gene fusions - Rearrangements
Fusion : QuiverSOGA3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSOGA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SOGA3
dbVarSOGA3
ClinVarSOGA3
1000_GenomesSOGA3 
Exome Variant ServerSOGA3
ExAC (Exome Aggregation Consortium)ENSG00000255330
GNOMAD BrowserENSG00000255330
Varsome BrowserSOGA3
Genetic variants : HAPMAP387104
Genomic Variants (DGV)SOGA3 [DGVbeta]
DECIPHERSOGA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSOGA3 
Mutations
ICGC Data PortalSOGA3 
TCGA Data PortalSOGA3 
Broad Tumor PortalSOGA3
OASIS PortalSOGA3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSOGA3
BioMutasearch SOGA3
DgiDB (Drug Gene Interaction Database)SOGA3
DoCM (Curated mutations)SOGA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SOGA3 (select a term)
intoGenSOGA3
Cancer3DSOGA3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSOGA3
MedgenSOGA3
Genetic Testing Registry SOGA3
NextProtQ5TF21 [Medical]
TSGene387104
GENETestsSOGA3
Target ValidationSOGA3
Huge Navigator SOGA3 [HugePedia]
snp3D : Map Gene to Disease387104
BioCentury BCIQSOGA3
ClinGenSOGA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387104
Chemical/Pharm GKB GenePA134983080
Clinical trialSOGA3
Miscellaneous
canSAR (ICR)SOGA3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSOGA3
EVEXSOGA3
GoPubMedSOGA3
iHOPSOGA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:32:35 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.