Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SOHLH1 (spermatogenesis and oogenesis specific basic helix-loop-helix 1)

Identity

Alias_namesC9orf157
chromosome 9 open reading frame 157
Alias_symbol (synonym)NOHLH
TEB2
bA100C15.3
bHLHe80
SPATA27
Other alias
HGNC (Hugo) SOHLH1
LocusID (NCBI) 402381
Atlas_Id 74069
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 135693409 and ends at 135699528 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SOHLH1   27845
Cards
Entrez_Gene (NCBI)SOHLH1  402381  spermatogenesis and oogenesis specific basic helix-loop-helix 1
AliasesC9orf157; NOHLH; SPATA27; TEB2; 
bA100C15.3; bHLHe80
GeneCards (Weizmann)SOHLH1
Ensembl hg19 (Hinxton)ENSG00000165643 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165643 [Gene_View]  chr9:135693409-135699528 [Contig_View]  SOHLH1 [Vega]
ICGC DataPortalENSG00000165643
TCGA cBioPortalSOHLH1
AceView (NCBI)SOHLH1
Genatlas (Paris)SOHLH1
WikiGenes402381
SOURCE (Princeton)SOHLH1
Genetics Home Reference (NIH)SOHLH1
Genomic and cartography
GoldenPath hg38 (UCSC)SOHLH1  -     chr9:135693409-135699528 -  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SOHLH1  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblSOHLH1 - 9q34.3 [CytoView hg19]  SOHLH1 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBISOHLH1 [Mapview hg19]  SOHLH1 [Mapview hg38]
OMIM610224   
Gene and transcription
Genbank (Entrez)AY884306 AY902244 BC031861 DB307692 DB339952
RefSeq transcript (Entrez)NM_001012415 NM_001101677
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SOHLH1
Cluster EST : UnigeneHs.120464 [ NCBI ]
CGAP (NCI)Hs.120464
Alternative Splicing GalleryENSG00000165643
Gene ExpressionSOHLH1 [ NCBI-GEO ]   SOHLH1 [ EBI - ARRAY_EXPRESS ]   SOHLH1 [ SEEK ]   SOHLH1 [ MEM ]
Gene Expression Viewer (FireBrowse)SOHLH1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)402381
GTEX Portal (Tissue expression)SOHLH1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JUK2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JUK2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JUK2
Splice isoforms : SwissVarQ5JUK2
PhosPhoSitePlusQ5JUK2
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (EBI)bHLH_dom    SOHLH1   
Domain families : Pfam (Sanger)HLH (PF00010)   
Domain families : Pfam (NCBI)pfam00010   
Domain families : Smart (EMBL)HLH (SM00353)  
Conserved Domain (NCBI)SOHLH1
DMDM Disease mutations402381
Blocks (Seattle)SOHLH1
SuperfamilyQ5JUK2
Human Protein AtlasENSG00000165643
Peptide AtlasQ5JUK2
HPRD16678
IPIIPI00456833   IPI00855714   
Protein Interaction databases
DIP (DOE-UCLA)Q5JUK2
IntAct (EBI)Q5JUK2
FunCoupENSG00000165643
BioGRIDSOHLH1
STRING (EMBL)SOHLH1
ZODIACSOHLH1
Ontologies - Pathways
QuickGOQ5JUK2
Ontology : AmiGORNA polymerase II regulatory region sequence-specific DNA binding  core promoter sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  ovarian follicle development  nucleus  cytoplasm  transcription from RNA polymerase II promoter  spermatogenesis  cell differentiation  positive regulation of transcription from RNA polymerase II promoter  protein dimerization activity  oogenesis  
Ontology : EGO-EBIRNA polymerase II regulatory region sequence-specific DNA binding  core promoter sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  ovarian follicle development  nucleus  cytoplasm  transcription from RNA polymerase II promoter  spermatogenesis  cell differentiation  positive regulation of transcription from RNA polymerase II promoter  protein dimerization activity  oogenesis  
NDEx NetworkSOHLH1
Atlas of Cancer Signalling NetworkSOHLH1
Wikipedia pathwaysSOHLH1
Orthology - Evolution
OrthoDB402381
GeneTree (enSembl)ENSG00000165643
Phylogenetic Trees/Animal Genes : TreeFamSOHLH1
HOVERGENQ5JUK2
HOGENOMQ5JUK2
Homologs : HomoloGeneSOHLH1
Homology/Alignments : Family Browser (UCSC)SOHLH1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSOHLH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SOHLH1
dbVarSOHLH1
ClinVarSOHLH1
1000_GenomesSOHLH1 
Exome Variant ServerSOHLH1
ExAC (Exome Aggregation Consortium)SOHLH1 (select the gene name)
Genetic variants : HAPMAP402381
Genomic Variants (DGV)SOHLH1 [DGVbeta]
DECIPHERSOHLH1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSOHLH1 
Mutations
ICGC Data PortalSOHLH1 
TCGA Data PortalSOHLH1 
Broad Tumor PortalSOHLH1
OASIS PortalSOHLH1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSOHLH1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSOHLH1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SOHLH1
DgiDB (Drug Gene Interaction Database)SOHLH1
DoCM (Curated mutations)SOHLH1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SOHLH1 (select a term)
intoGenSOHLH1
Cancer3DSOHLH1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610224   
Orphanet22774   
MedgenSOHLH1
Genetic Testing Registry SOHLH1
NextProtQ5JUK2 [Medical]
TSGene402381
GENETestsSOHLH1
Target ValidationSOHLH1
Huge Navigator SOHLH1 [HugePedia]
snp3D : Map Gene to Disease402381
BioCentury BCIQSOHLH1
ClinGenSOHLH1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD402381
Chemical/Pharm GKB GenePA134899168
Clinical trialSOHLH1
Miscellaneous
canSAR (ICR)SOHLH1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSOHLH1
EVEXSOHLH1
GoPubMedSOHLH1
iHOPSOHLH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:06 CEST 2017

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