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SOSTDC1 (sclerostin domain containing 1)

Identity

Alias_symbol (synonym)DKFZp564D206
USAG1
DAND7
Other aliasCDA019
ECTODIN
HGNC (Hugo) SOSTDC1
LocusID (NCBI) 25928
Atlas_Id 50503
Location 7p21.1  [Link to chromosome band 7p21]
Location_base_pair Starts at 16501106 and ends at 16505474 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SOSTDC1 (7p21.1) / SOSTDC1 (7p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SOSTDC1   21748
Cards
Entrez_Gene (NCBI)SOSTDC1  25928  sclerostin domain containing 1
AliasesCDA019; ECTODIN; USAG1
GeneCards (Weizmann)SOSTDC1
Ensembl hg19 (Hinxton)ENSG00000171243 [Gene_View]  chr7:16501106-16505474 [Contig_View]  SOSTDC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171243 [Gene_View]  chr7:16501106-16505474 [Contig_View]  SOSTDC1 [Vega]
ICGC DataPortalENSG00000171243
TCGA cBioPortalSOSTDC1
AceView (NCBI)SOSTDC1
Genatlas (Paris)SOSTDC1
WikiGenes25928
SOURCE (Princeton)SOSTDC1
Genetics Home Reference (NIH)SOSTDC1
Genomic and cartography
GoldenPath hg19 (UCSC)SOSTDC1  -     chr7:16501106-16505474 -  7p21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SOSTDC1  -     7p21.1   [Description]    (hg38-Dec_2013)
EnsemblSOSTDC1 - 7p21.1 [CytoView hg19]  SOSTDC1 - 7p21.1 [CytoView hg38]
Mapping of homologs : NCBISOSTDC1 [Mapview hg19]  SOSTDC1 [Mapview hg38]
OMIM609675   
Gene and transcription
Genbank (Entrez)AB059270 AF361494 AI540640 AI927000 AK093408
RefSeq transcript (Entrez)NM_015464
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)SOSTDC1
Cluster EST : UnigeneHs.648106 [ NCBI ]
CGAP (NCI)Hs.648106
Alternative Splicing GalleryENSG00000171243
Gene ExpressionSOSTDC1 [ NCBI-GEO ]   SOSTDC1 [ EBI - ARRAY_EXPRESS ]   SOSTDC1 [ SEEK ]   SOSTDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)SOSTDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25928
GTEX Portal (Tissue expression)SOSTDC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6X4U4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6X4U4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6X4U4
Splice isoforms : SwissVarQ6X4U4
PhosPhoSitePlusQ6X4U4
Domaine pattern : Prosite (Expaxy)CTCK_2 (PS01225)   
Domains : Interpro (EBI)Cys_knot_C    Sclerostin/SOSTDC1   
Domain families : Pfam (Sanger)Sclerostin (PF05463)   
Domain families : Pfam (NCBI)pfam05463   
Conserved Domain (NCBI)SOSTDC1
DMDM Disease mutations25928
Blocks (Seattle)SOSTDC1
SuperfamilyQ6X4U4
Human Protein AtlasENSG00000171243
Peptide AtlasQ6X4U4
HPRD15417
IPIIPI00479196   IPI00640854   
Protein Interaction databases
DIP (DOE-UCLA)Q6X4U4
IntAct (EBI)Q6X4U4
FunCoupENSG00000171243
BioGRIDSOSTDC1
STRING (EMBL)SOSTDC1
ZODIACSOSTDC1
Ontologies - Pathways
QuickGOQ6X4U4
Ontology : AmiGOextracellular space  pattern specification process  negative regulation of cell fate commitment  Wnt signaling pathway  negative regulation of BMP signaling pathway  hair follicle morphogenesis  odontogenesis of dentin-containing tooth  mammary gland bud morphogenesis  negative regulation of canonical Wnt signaling pathway  
Ontology : EGO-EBIextracellular space  pattern specification process  negative regulation of cell fate commitment  Wnt signaling pathway  negative regulation of BMP signaling pathway  hair follicle morphogenesis  odontogenesis of dentin-containing tooth  mammary gland bud morphogenesis  negative regulation of canonical Wnt signaling pathway  
NDEx NetworkSOSTDC1
Atlas of Cancer Signalling NetworkSOSTDC1
Wikipedia pathwaysSOSTDC1
Orthology - Evolution
OrthoDB25928
GeneTree (enSembl)ENSG00000171243
Phylogenetic Trees/Animal Genes : TreeFamSOSTDC1
HOVERGENQ6X4U4
HOGENOMQ6X4U4
Homologs : HomoloGeneSOSTDC1
Homology/Alignments : Family Browser (UCSC)SOSTDC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSOSTDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SOSTDC1
dbVarSOSTDC1
ClinVarSOSTDC1
1000_GenomesSOSTDC1 
Exome Variant ServerSOSTDC1
ExAC (Exome Aggregation Consortium)SOSTDC1 (select the gene name)
Genetic variants : HAPMAP25928
Genomic Variants (DGV)SOSTDC1 [DGVbeta]
DECIPHER (Syndromes)7:16501106-16505474  ENSG00000171243
CONAN: Copy Number AnalysisSOSTDC1 
Mutations
ICGC Data PortalSOSTDC1 
TCGA Data PortalSOSTDC1 
Broad Tumor PortalSOSTDC1
OASIS PortalSOSTDC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSOSTDC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSOSTDC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SOSTDC1
DgiDB (Drug Gene Interaction Database)SOSTDC1
DoCM (Curated mutations)SOSTDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SOSTDC1 (select a term)
intoGenSOSTDC1
Cancer3DSOSTDC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609675   
Orphanet
MedgenSOSTDC1
Genetic Testing Registry SOSTDC1
NextProtQ6X4U4 [Medical]
TSGene25928
GENETestsSOSTDC1
Huge Navigator SOSTDC1 [HugePedia]
snp3D : Map Gene to Disease25928
BioCentury BCIQSOSTDC1
ClinGenSOSTDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25928
Chemical/Pharm GKB GenePA134937603
Clinical trialSOSTDC1
Miscellaneous
canSAR (ICR)SOSTDC1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSOSTDC1
EVEXSOSTDC1
GoPubMedSOSTDC1
iHOPSOSTDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:20:26 CEST 2017

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