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SOWAHA (sosondowah ankyrin repeat domain family member A)

Identity

Alias_namesANKRD43
ankyrin repeat domain 43
Other alias
HGNC (Hugo) SOWAHA
LocusID (NCBI) 134548
Atlas_Id 74075
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 132813324 and ends at 132816797 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SOWAHA   27033
Cards
Entrez_Gene (NCBI)SOWAHA  134548  sosondowah ankyrin repeat domain family member A
AliasesANKRD43
GeneCards (Weizmann)SOWAHA
Ensembl hg19 (Hinxton)ENSG00000198944 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198944 [Gene_View]  chr5:132813324-132816797 [Contig_View]  SOWAHA [Vega]
ICGC DataPortalENSG00000198944
TCGA cBioPortalSOWAHA
AceView (NCBI)SOWAHA
Genatlas (Paris)SOWAHA
WikiGenes134548
SOURCE (Princeton)SOWAHA
Genetics Home Reference (NIH)SOWAHA
Genomic and cartography
GoldenPath hg38 (UCSC)SOWAHA  -     chr5:132813324-132816797 +  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SOWAHA  -     5q31.1   [Description]    (hg19-Feb_2009)
EnsemblSOWAHA - 5q31.1 [CytoView hg19]  SOWAHA - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBISOWAHA [Mapview hg19]  SOWAHA [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090823 AK092782 AW450551 BC104771 BC104775
RefSeq transcript (Entrez)NM_175873
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SOWAHA
Cluster EST : UnigeneHs.13308 [ NCBI ]
CGAP (NCI)Hs.13308
Alternative Splicing GalleryENSG00000198944
Gene ExpressionSOWAHA [ NCBI-GEO ]   SOWAHA [ EBI - ARRAY_EXPRESS ]   SOWAHA [ SEEK ]   SOWAHA [ MEM ]
Gene Expression Viewer (FireBrowse)SOWAHA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134548
GTEX Portal (Tissue expression)SOWAHA
Human Protein AtlasENSG00000198944-SOWAHA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2M3V2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2M3V2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2M3V2
Splice isoforms : SwissVarQ2M3V2
PhosPhoSitePlusQ2M3V2
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)SOWAHA
DMDM Disease mutations134548
Blocks (Seattle)SOWAHA
SuperfamilyQ2M3V2
Human Protein Atlas [tissue]ENSG00000198944-SOWAHA [tissue]
Peptide AtlasQ2M3V2
HPRD14059
IPIIPI00176199   IPI00984996   
Protein Interaction databases
DIP (DOE-UCLA)Q2M3V2
IntAct (EBI)Q2M3V2
FunCoupENSG00000198944
BioGRIDSOWAHA
STRING (EMBL)SOWAHA
ZODIACSOWAHA
Ontologies - Pathways
QuickGOQ2M3V2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSOWAHA
Atlas of Cancer Signalling NetworkSOWAHA
Wikipedia pathwaysSOWAHA
Orthology - Evolution
OrthoDB134548
GeneTree (enSembl)ENSG00000198944
Phylogenetic Trees/Animal Genes : TreeFamSOWAHA
HOVERGENQ2M3V2
HOGENOMQ2M3V2
Homologs : HomoloGeneSOWAHA
Homology/Alignments : Family Browser (UCSC)SOWAHA
Gene fusions - Rearrangements
Tumor Fusion PortalSOWAHA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSOWAHA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SOWAHA
dbVarSOWAHA
ClinVarSOWAHA
1000_GenomesSOWAHA 
Exome Variant ServerSOWAHA
ExAC (Exome Aggregation Consortium)ENSG00000198944
GNOMAD BrowserENSG00000198944
Genetic variants : HAPMAP134548
Genomic Variants (DGV)SOWAHA [DGVbeta]
DECIPHERSOWAHA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSOWAHA 
Mutations
ICGC Data PortalSOWAHA 
TCGA Data PortalSOWAHA 
Broad Tumor PortalSOWAHA
OASIS PortalSOWAHA [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSOWAHA
BioMutasearch SOWAHA
DgiDB (Drug Gene Interaction Database)SOWAHA
DoCM (Curated mutations)SOWAHA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SOWAHA (select a term)
intoGenSOWAHA
Cancer3DSOWAHA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSOWAHA
MedgenSOWAHA
Genetic Testing Registry SOWAHA
NextProtQ2M3V2 [Medical]
TSGene134548
GENETestsSOWAHA
Target ValidationSOWAHA
Huge Navigator SOWAHA [HugePedia]
snp3D : Map Gene to Disease134548
BioCentury BCIQSOWAHA
ClinGenSOWAHA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD134548
Chemical/Pharm GKB GenePA142672610
Clinical trialSOWAHA
Miscellaneous
canSAR (ICR)SOWAHA (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSOWAHA
EVEXSOWAHA
GoPubMedSOWAHA
iHOPSOWAHA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:13:10 CET 2017

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