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SOWAHB (sosondowah ankyrin repeat domain family member B)

Identity

Alias_namesANKRD56
ankyrin repeat domain 56
Other alias
HGNC (Hugo) SOWAHB
LocusID (NCBI) 345079
Atlas_Id 74076
Location 4q21.1  [Link to chromosome band 4q21]
Location_base_pair Starts at 76894929 and ends at 76897849 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SOWAHB   32958
Cards
Entrez_Gene (NCBI)SOWAHB  345079  sosondowah ankyrin repeat domain family member B
AliasesANKRD56
GeneCards (Weizmann)SOWAHB
Ensembl hg19 (Hinxton)ENSG00000186212 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186212 [Gene_View]  chr4:76894929-76897849 [Contig_View]  SOWAHB [Vega]
ICGC DataPortalENSG00000186212
TCGA cBioPortalSOWAHB
AceView (NCBI)SOWAHB
Genatlas (Paris)SOWAHB
WikiGenes345079
SOURCE (Princeton)SOWAHB
Genetics Home Reference (NIH)SOWAHB
Genomic and cartography
GoldenPath hg38 (UCSC)SOWAHB  -     chr4:76894929-76897849 -  4q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SOWAHB  -     4q21.1   [Description]    (hg19-Feb_2009)
EnsemblSOWAHB - 4q21.1 [CytoView hg19]  SOWAHB - 4q21.1 [CytoView hg38]
Mapping of homologs : NCBISOWAHB [Mapview hg19]  SOWAHB [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137241 BC137255
RefSeq transcript (Entrez)NM_001029870
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SOWAHB
Cluster EST : UnigeneHs.257292 [ NCBI ]
CGAP (NCI)Hs.257292
Alternative Splicing GalleryENSG00000186212
Gene ExpressionSOWAHB [ NCBI-GEO ]   SOWAHB [ EBI - ARRAY_EXPRESS ]   SOWAHB [ SEEK ]   SOWAHB [ MEM ]
Gene Expression Viewer (FireBrowse)SOWAHB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)345079
GTEX Portal (Tissue expression)SOWAHB
Human Protein AtlasENSG00000186212-SOWAHB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NEL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NEL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NEL2
Splice isoforms : SwissVarA6NEL2
PhosPhoSitePlusA6NEL2
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)SOWAHB
DMDM Disease mutations345079
Blocks (Seattle)SOWAHB
SuperfamilyA6NEL2
Human Protein Atlas [tissue]ENSG00000186212-SOWAHB [tissue]
Peptide AtlasA6NEL2
HPRD18789
IPIIPI00234154   
Protein Interaction databases
DIP (DOE-UCLA)A6NEL2
IntAct (EBI)A6NEL2
FunCoupENSG00000186212
BioGRIDSOWAHB
STRING (EMBL)SOWAHB
ZODIACSOWAHB
Ontologies - Pathways
QuickGOA6NEL2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSOWAHB
Atlas of Cancer Signalling NetworkSOWAHB
Wikipedia pathwaysSOWAHB
Orthology - Evolution
OrthoDB345079
GeneTree (enSembl)ENSG00000186212
Phylogenetic Trees/Animal Genes : TreeFamSOWAHB
HOVERGENA6NEL2
HOGENOMA6NEL2
Homologs : HomoloGeneSOWAHB
Homology/Alignments : Family Browser (UCSC)SOWAHB
Gene fusions - Rearrangements
Tumor Fusion PortalSOWAHB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSOWAHB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SOWAHB
dbVarSOWAHB
ClinVarSOWAHB
1000_GenomesSOWAHB 
Exome Variant ServerSOWAHB
ExAC (Exome Aggregation Consortium)ENSG00000186212
GNOMAD BrowserENSG00000186212
Genetic variants : HAPMAP345079
Genomic Variants (DGV)SOWAHB [DGVbeta]
DECIPHERSOWAHB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSOWAHB 
Mutations
ICGC Data PortalSOWAHB 
TCGA Data PortalSOWAHB 
Broad Tumor PortalSOWAHB
OASIS PortalSOWAHB [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSOWAHB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SOWAHB
DgiDB (Drug Gene Interaction Database)SOWAHB
DoCM (Curated mutations)SOWAHB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SOWAHB (select a term)
intoGenSOWAHB
Cancer3DSOWAHB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSOWAHB
MedgenSOWAHB
Genetic Testing Registry SOWAHB
NextProtA6NEL2 [Medical]
TSGene345079
GENETestsSOWAHB
Target ValidationSOWAHB
Huge Navigator SOWAHB [HugePedia]
snp3D : Map Gene to Disease345079
BioCentury BCIQSOWAHB
ClinGenSOWAHB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD345079
Chemical/Pharm GKB GenePA145149864
Clinical trialSOWAHB
Miscellaneous
canSAR (ICR)SOWAHB (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSOWAHB
EVEXSOWAHB
GoPubMedSOWAHB
iHOPSOWAHB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:10:59 CET 2017

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