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SOWAHC (sosondowah ankyrin repeat domain family member C)

Identity

Alias_namesC2orf26
ANKRD57
ankyrin repeat domain 57
Alias_symbol (synonym)FLJ21870
Other alias
HGNC (Hugo) SOWAHC
LocusID (NCBI) 65124
Atlas_Id 74077
Location 2q13  [Link to chromosome band 2q13]
Location_base_pair Starts at 109614334 and ends at 109618987 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SOWAHC   26149
Cards
Entrez_Gene (NCBI)SOWAHC  65124  sosondowah ankyrin repeat domain family member C
AliasesANKRD57; C2orf26
GeneCards (Weizmann)SOWAHC
Ensembl hg19 (Hinxton)ENSG00000198142 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198142 [Gene_View]  chr2:109614334-109618987 [Contig_View]  SOWAHC [Vega]
ICGC DataPortalENSG00000198142
TCGA cBioPortalSOWAHC
AceView (NCBI)SOWAHC
Genatlas (Paris)SOWAHC
WikiGenes65124
SOURCE (Princeton)SOWAHC
Genetics Home Reference (NIH)SOWAHC
Genomic and cartography
GoldenPath hg38 (UCSC)SOWAHC  -     chr2:109614334-109618987 +  2q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SOWAHC  -     2q13   [Description]    (hg19-Feb_2009)
EnsemblSOWAHC - 2q13 [CytoView hg19]  SOWAHC - 2q13 [CytoView hg38]
Mapping of homologs : NCBISOWAHC [Mapview hg19]  SOWAHC [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023346 AK025523 BC036652 BC066772
RefSeq transcript (Entrez)NM_023016
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SOWAHC
Cluster EST : UnigeneHs.355455 [ NCBI ]
CGAP (NCI)Hs.355455
Alternative Splicing GalleryENSG00000198142
Gene ExpressionSOWAHC [ NCBI-GEO ]   SOWAHC [ EBI - ARRAY_EXPRESS ]   SOWAHC [ SEEK ]   SOWAHC [ MEM ]
Gene Expression Viewer (FireBrowse)SOWAHC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65124
GTEX Portal (Tissue expression)SOWAHC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53LP3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53LP3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53LP3
Splice isoforms : SwissVarQ53LP3
PhosPhoSitePlusQ53LP3
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)SOWAHC
DMDM Disease mutations65124
Blocks (Seattle)SOWAHC
SuperfamilyQ53LP3
Human Protein AtlasENSG00000198142
Peptide AtlasQ53LP3
HPRD08643
IPIIPI00253323   
Protein Interaction databases
DIP (DOE-UCLA)Q53LP3
IntAct (EBI)Q53LP3
FunCoupENSG00000198142
BioGRIDSOWAHC
STRING (EMBL)SOWAHC
ZODIACSOWAHC
Ontologies - Pathways
QuickGOQ53LP3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSOWAHC
Atlas of Cancer Signalling NetworkSOWAHC
Wikipedia pathwaysSOWAHC
Orthology - Evolution
OrthoDB65124
GeneTree (enSembl)ENSG00000198142
Phylogenetic Trees/Animal Genes : TreeFamSOWAHC
HOVERGENQ53LP3
HOGENOMQ53LP3
Homologs : HomoloGeneSOWAHC
Homology/Alignments : Family Browser (UCSC)SOWAHC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSOWAHC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SOWAHC
dbVarSOWAHC
ClinVarSOWAHC
1000_GenomesSOWAHC 
Exome Variant ServerSOWAHC
ExAC (Exome Aggregation Consortium)SOWAHC (select the gene name)
Genetic variants : HAPMAP65124
Genomic Variants (DGV)SOWAHC [DGVbeta]
DECIPHERSOWAHC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSOWAHC 
Mutations
ICGC Data PortalSOWAHC 
TCGA Data PortalSOWAHC 
Broad Tumor PortalSOWAHC
OASIS PortalSOWAHC [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSOWAHC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SOWAHC
DgiDB (Drug Gene Interaction Database)SOWAHC
DoCM (Curated mutations)SOWAHC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SOWAHC (select a term)
intoGenSOWAHC
Cancer3DSOWAHC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSOWAHC
Genetic Testing Registry SOWAHC
NextProtQ53LP3 [Medical]
TSGene65124
GENETestsSOWAHC
Target ValidationSOWAHC
Huge Navigator SOWAHC [HugePedia]
snp3D : Map Gene to Disease65124
BioCentury BCIQSOWAHC
ClinGenSOWAHC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65124
Chemical/Pharm GKB GenePA134882354
Clinical trialSOWAHC
Miscellaneous
canSAR (ICR)SOWAHC (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSOWAHC
EVEXSOWAHC
GoPubMedSOWAHC
iHOPSOWAHC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:43:39 CEST 2017

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