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SOWAHD (sosondowah ankyrin repeat domain family member D)

Identity

Alias_namesANKRD58
ankyrin repeat domain 58
Other alias
HGNC (Hugo) SOWAHD
LocusID (NCBI) 347454
Atlas_Id 74078
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 119758613 and ends at 119760202 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SOWAHD   32960
Cards
Entrez_Gene (NCBI)SOWAHD  347454  sosondowah ankyrin repeat domain family member D
AliasesANKRD58
GeneCards (Weizmann)SOWAHD
Ensembl hg19 (Hinxton)ENSG00000187808 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187808 [Gene_View]  chrX:119758613-119760202 [Contig_View]  SOWAHD [Vega]
ICGC DataPortalENSG00000187808
TCGA cBioPortalSOWAHD
AceView (NCBI)SOWAHD
Genatlas (Paris)SOWAHD
WikiGenes347454
SOURCE (Princeton)SOWAHD
Genetics Home Reference (NIH)SOWAHD
Genomic and cartography
GoldenPath hg38 (UCSC)SOWAHD  -     chrX:119758613-119760202 +  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SOWAHD  -     Xq24   [Description]    (hg19-Feb_2009)
EnsemblSOWAHD - Xq24 [CytoView hg19]  SOWAHD - Xq24 [CytoView hg38]
Mapping of homologs : NCBISOWAHD [Mapview hg19]  SOWAHD [Mapview hg38]
Gene and transcription
Genbank (Entrez)CD368490
RefSeq transcript (Entrez)NM_001105576
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SOWAHD
Cluster EST : UnigeneHs.355223 [ NCBI ]
CGAP (NCI)Hs.355223
Alternative Splicing GalleryENSG00000187808
Gene ExpressionSOWAHD [ NCBI-GEO ]   SOWAHD [ EBI - ARRAY_EXPRESS ]   SOWAHD [ SEEK ]   SOWAHD [ MEM ]
Gene Expression Viewer (FireBrowse)SOWAHD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347454
GTEX Portal (Tissue expression)SOWAHD
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NJG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NJG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NJG2
Splice isoforms : SwissVarA6NJG2
PhosPhoSitePlusA6NJG2
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)SOWAHD
DMDM Disease mutations347454
Blocks (Seattle)SOWAHD
SuperfamilyA6NJG2
Human Protein AtlasENSG00000187808
Peptide AtlasA6NJG2
IPIIPI00232862   
Protein Interaction databases
DIP (DOE-UCLA)A6NJG2
IntAct (EBI)A6NJG2
FunCoupENSG00000187808
BioGRIDSOWAHD
STRING (EMBL)SOWAHD
ZODIACSOWAHD
Ontologies - Pathways
QuickGOA6NJG2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSOWAHD
Atlas of Cancer Signalling NetworkSOWAHD
Wikipedia pathwaysSOWAHD
Orthology - Evolution
OrthoDB347454
GeneTree (enSembl)ENSG00000187808
Phylogenetic Trees/Animal Genes : TreeFamSOWAHD
HOVERGENA6NJG2
HOGENOMA6NJG2
Homologs : HomoloGeneSOWAHD
Homology/Alignments : Family Browser (UCSC)SOWAHD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSOWAHD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SOWAHD
dbVarSOWAHD
ClinVarSOWAHD
1000_GenomesSOWAHD 
Exome Variant ServerSOWAHD
ExAC (Exome Aggregation Consortium)SOWAHD (select the gene name)
Genetic variants : HAPMAP347454
Genomic Variants (DGV)SOWAHD [DGVbeta]
DECIPHERSOWAHD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSOWAHD 
Mutations
ICGC Data PortalSOWAHD 
TCGA Data PortalSOWAHD 
Broad Tumor PortalSOWAHD
OASIS PortalSOWAHD [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSOWAHD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SOWAHD
DgiDB (Drug Gene Interaction Database)SOWAHD
DoCM (Curated mutations)SOWAHD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SOWAHD (select a term)
intoGenSOWAHD
Cancer3DSOWAHD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSOWAHD
Genetic Testing Registry SOWAHD
NextProtA6NJG2 [Medical]
TSGene347454
GENETestsSOWAHD
Target ValidationSOWAHD
Huge Navigator SOWAHD [HugePedia]
snp3D : Map Gene to Disease347454
BioCentury BCIQSOWAHD
ClinGenSOWAHD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347454
Chemical/Pharm GKB GenePA145149865
Clinical trialSOWAHD
Miscellaneous
canSAR (ICR)SOWAHD (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSOWAHD
EVEXSOWAHD
GoPubMedSOWAHD
iHOPSOWAHD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:07 CEST 2017

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