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SOX1-OT (SOX1 overlapping transcript)

Identity

Alias_namesLINC00403
long intergenic non-protein coding RNA 403
Other alias
HGNC (Hugo) SOX1-OT
LocusID (NCBI) 100505996
Atlas_Id 79243
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 111972310 and ends at 112108015 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SOX1-OT   42733
Cards
Entrez_Gene (NCBI)SOX1-OT  100505996  SOX1 overlapping transcript
AliasesLINC00403
GeneCards (Weizmann)SOX1-OT
Ensembl hg19 (Hinxton)ENSG00000224243 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224243 [Gene_View]  chr13:111972310-112108015 [Contig_View]  SOX1-OT [Vega]
ICGC DataPortalENSG00000224243
TCGA cBioPortalSOX1-OT
AceView (NCBI)SOX1-OT
Genatlas (Paris)SOX1-OT
WikiGenes100505996
SOURCE (Princeton)SOX1-OT
Genetics Home Reference (NIH)SOX1-OT
Genomic and cartography
GoldenPath hg38 (UCSC)SOX1-OT  -     chr13:111972310-112108015 +  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SOX1-OT  -     13q34   [Description]    (hg19-Feb_2009)
EnsemblSOX1-OT - 13q34 [CytoView hg19]  SOX1-OT - 13q34 [CytoView hg38]
Mapping of homologs : NCBISOX1-OT [Mapview hg19]  SOX1-OT [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI693652 AK055145 AK091058 BQ184460 DA195709
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SOX1-OT
Cluster EST : UnigeneHs.734713 [ NCBI ]
CGAP (NCI)Hs.734713
Alternative Splicing GalleryENSG00000224243
Gene ExpressionSOX1-OT [ NCBI-GEO ]   SOX1-OT [ EBI - ARRAY_EXPRESS ]   SOX1-OT [ SEEK ]   SOX1-OT [ MEM ]
Gene Expression Viewer (FireBrowse)SOX1-OT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505996
GTEX Portal (Tissue expression)SOX1-OT
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SOX1-OT
DMDM Disease mutations100505996
Blocks (Seattle)SOX1-OT
Human Protein AtlasENSG00000224243
Protein Interaction databases
FunCoupENSG00000224243
BioGRIDSOX1-OT
STRING (EMBL)SOX1-OT
ZODIACSOX1-OT
Ontologies - Pathways
Huge Navigator SOX1-OT [HugePedia]
snp3D : Map Gene to Disease100505996
BioCentury BCIQSOX1-OT
ClinGenSOX1-OT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505996
Clinical trialSOX1-OT
Miscellaneous
canSAR (ICR)SOX1-OT (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSOX1-OT
EVEXSOX1-OT
GoPubMedSOX1-OT
iHOPSOX1-OT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 13:40:07 CEST 2017

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