Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SOX14 (SRY-box 14)

Identity

Alias_namesSRY (sex determining region Y)-box 14
SRY box 14
Alias_symbol (synonym)SOX28
Other alias
HGNC (Hugo) SOX14
LocusID (NCBI) 8403
Atlas_Id 55672
Location 3q22.3  [Link to chromosome band 3q22]
Location_base_pair Starts at 137764292 and ends at 137766330 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SOX14   11193
Cards
Entrez_Gene (NCBI)SOX14  8403  SRY-box 14
AliasesSOX28
GeneCards (Weizmann)SOX14
Ensembl hg19 (Hinxton)ENSG00000168875 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168875 [Gene_View]  chr3:137764292-137766330 [Contig_View]  SOX14 [Vega]
ICGC DataPortalENSG00000168875
TCGA cBioPortalSOX14
AceView (NCBI)SOX14
Genatlas (Paris)SOX14
WikiGenes8403
SOURCE (Princeton)SOX14
Genetics Home Reference (NIH)SOX14
Genomic and cartography
GoldenPath hg38 (UCSC)SOX14  -     chr3:137764292-137766330 +  3q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SOX14  -     3q22.3   [Description]    (hg19-Feb_2009)
EnsemblSOX14 - 3q22.3 [CytoView hg19]  SOX14 - 3q22.3 [CytoView hg38]
Mapping of homologs : NCBISOX14 [Mapview hg19]  SOX14 [Mapview hg38]
OMIM604747   
Gene and transcription
Genbank (Entrez)AK314127 BC106729 BC106730
RefSeq transcript (Entrez)NM_004189
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SOX14
Cluster EST : UnigeneHs.248184 [ NCBI ]
CGAP (NCI)Hs.248184
Alternative Splicing GalleryENSG00000168875
Gene ExpressionSOX14 [ NCBI-GEO ]   SOX14 [ EBI - ARRAY_EXPRESS ]   SOX14 [ SEEK ]   SOX14 [ MEM ]
Gene Expression Viewer (FireBrowse)SOX14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8403
GTEX Portal (Tissue expression)SOX14
Human Protein AtlasENSG00000168875-SOX14 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95416   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95416  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95416
Splice isoforms : SwissVarO95416
PhosPhoSitePlusO95416
Domaine pattern : Prosite (Expaxy)HMG_BOX_2 (PS50118)   
Domains : Interpro (EBI)HMG_box_dom    SOX_fam   
Domain families : Pfam (Sanger)HMG_box (PF00505)    SOXp (PF12336)   
Domain families : Pfam (NCBI)pfam00505    pfam12336   
Domain families : Smart (EMBL)HMG (SM00398)  
Conserved Domain (NCBI)SOX14
DMDM Disease mutations8403
Blocks (Seattle)SOX14
SuperfamilyO95416
Human Protein Atlas [tissue]ENSG00000168875-SOX14 [tissue]
Peptide AtlasO95416
HPRD16067
IPIIPI00030676   IPI00816437   
Protein Interaction databases
DIP (DOE-UCLA)O95416
IntAct (EBI)O95416
FunCoupENSG00000168875
BioGRIDSOX14
STRING (EMBL)SOX14
ZODIACSOX14
Ontologies - Pathways
QuickGOO95416
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II transcription factor activity, sequence-specific DNA binding  chromatin binding  protein binding  cellular_component  transcription, DNA-templated  nervous system development  visual perception  entrainment of circadian clock  sequence-specific DNA binding  nuclear transcription factor complex  negative regulation of transcription, DNA-templated  protein heterodimerization activity  regulation of neuron migration  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II transcription factor activity, sequence-specific DNA binding  chromatin binding  protein binding  cellular_component  transcription, DNA-templated  nervous system development  visual perception  entrainment of circadian clock  sequence-specific DNA binding  nuclear transcription factor complex  negative regulation of transcription, DNA-templated  protein heterodimerization activity  regulation of neuron migration  
NDEx NetworkSOX14
Atlas of Cancer Signalling NetworkSOX14
Wikipedia pathwaysSOX14
Orthology - Evolution
OrthoDB8403
GeneTree (enSembl)ENSG00000168875
Phylogenetic Trees/Animal Genes : TreeFamSOX14
HOVERGENO95416
HOGENOMO95416
Homologs : HomoloGeneSOX14
Homology/Alignments : Family Browser (UCSC)SOX14
Gene fusions - Rearrangements
Tumor Fusion PortalSOX14
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSOX14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SOX14
dbVarSOX14
ClinVarSOX14
1000_GenomesSOX14 
Exome Variant ServerSOX14
ExAC (Exome Aggregation Consortium)ENSG00000168875
GNOMAD BrowserENSG00000168875
Genetic variants : HAPMAP8403
Genomic Variants (DGV)SOX14 [DGVbeta]
DECIPHERSOX14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSOX14 
Mutations
ICGC Data PortalSOX14 
TCGA Data PortalSOX14 
Broad Tumor PortalSOX14
OASIS PortalSOX14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSOX14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSOX14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SOX14
DgiDB (Drug Gene Interaction Database)SOX14
DoCM (Curated mutations)SOX14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SOX14 (select a term)
intoGenSOX14
Cancer3DSOX14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604747   
Orphanet
DisGeNETSOX14
MedgenSOX14
Genetic Testing Registry SOX14
NextProtO95416 [Medical]
TSGene8403
GENETestsSOX14
Target ValidationSOX14
Huge Navigator SOX14 [HugePedia]
snp3D : Map Gene to Disease8403
BioCentury BCIQSOX14
ClinGenSOX14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8403
Chemical/Pharm GKB GenePA36030
Clinical trialSOX14
Miscellaneous
canSAR (ICR)SOX14 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSOX14
EVEXSOX14
GoPubMedSOX14
iHOPSOX14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:36:01 CET 2017

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