Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SOX15 (SRY-box 15)

Identity

Alias_namesSOX20
SRY (sex determining region Y)-box 20
SRY (sex determining region Y)-box 15
SRY box 15
Alias_symbol (synonym)SOX27
SOX26
Other alias
HGNC (Hugo) SOX15
LocusID (NCBI) 6665
Atlas_Id 53841
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7491498 and ends at 7493488 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SOX15   11196
Cards
Entrez_Gene (NCBI)SOX15  6665  SRY-box 15
AliasesSOX20; SOX26; SOX27
GeneCards (Weizmann)SOX15
Ensembl hg19 (Hinxton)ENSG00000129194 [Gene_View]  chr17:7491498-7493488 [Contig_View]  SOX15 [Vega]
Ensembl hg38 (Hinxton)ENSG00000129194 [Gene_View]  chr17:7491498-7493488 [Contig_View]  SOX15 [Vega]
ICGC DataPortalENSG00000129194
TCGA cBioPortalSOX15
AceView (NCBI)SOX15
Genatlas (Paris)SOX15
WikiGenes6665
SOURCE (Princeton)SOX15
Genetics Home Reference (NIH)SOX15
Genomic and cartography
GoldenPath hg19 (UCSC)SOX15  -     chr17:7491498-7493488 -  17p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SOX15  -     17p13.1   [Description]    (hg38-Dec_2013)
EnsemblSOX15 - 17p13.1 [CytoView hg19]  SOX15 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBISOX15 [Mapview hg19]  SOX15 [Mapview hg38]
OMIM601297   
Gene and transcription
Genbank (Entrez)AB006867 AJ006222 AK301687 BC000985 BC072003
RefSeq transcript (Entrez)NM_006942
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_009204 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)SOX15
Cluster EST : UnigeneHs.95582 [ NCBI ]
CGAP (NCI)Hs.95582
Alternative Splicing GalleryENSG00000129194
Gene ExpressionSOX15 [ NCBI-GEO ]   SOX15 [ EBI - ARRAY_EXPRESS ]   SOX15 [ SEEK ]   SOX15 [ MEM ]
Gene Expression Viewer (FireBrowse)SOX15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6665
GTEX Portal (Tissue expression)SOX15
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60248   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60248  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60248
Splice isoforms : SwissVarO60248
PhosPhoSitePlusO60248
Domaine pattern : Prosite (Expaxy)HMG_BOX_2 (PS50118)   
Domains : Interpro (EBI)HMG_box_dom    SOX15   
Domain families : Pfam (Sanger)HMG_box (PF00505)   
Domain families : Pfam (NCBI)pfam00505   
Domain families : Smart (EMBL)HMG (SM00398)  
Conserved Domain (NCBI)SOX15
DMDM Disease mutations6665
Blocks (Seattle)SOX15
SuperfamilyO60248
Human Protein AtlasENSG00000129194
Peptide AtlasO60248
HPRD03191
IPIIPI00028451   IPI00816311   IPI00816228   
Protein Interaction databases
DIP (DOE-UCLA)O60248
IntAct (EBI)O60248
FunCoupENSG00000129194
BioGRIDSOX15
STRING (EMBL)SOX15
ZODIACSOX15
Ontologies - Pathways
QuickGOO60248
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  chromatin binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  cytoplasm  chromatin organization  regulation of transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  male gonad development  positive regulation of satellite cell activation involved in skeletal muscle regeneration  cell differentiation  skeletal muscle tissue regeneration  nuclear transcription factor complex  negative regulation of striated muscle tissue development  positive regulation of transcription from RNA polymerase II promoter  protein heterodimerization activity  myoblast development  positive regulation of G0 to G1 transition  positive regulation of myoblast proliferation  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  chromatin binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  cytoplasm  chromatin organization  regulation of transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  male gonad development  positive regulation of satellite cell activation involved in skeletal muscle regeneration  cell differentiation  skeletal muscle tissue regeneration  nuclear transcription factor complex  negative regulation of striated muscle tissue development  positive regulation of transcription from RNA polymerase II promoter  protein heterodimerization activity  myoblast development  positive regulation of G0 to G1 transition  positive regulation of myoblast proliferation  
NDEx NetworkSOX15
Atlas of Cancer Signalling NetworkSOX15
Wikipedia pathwaysSOX15
Orthology - Evolution
OrthoDB6665
GeneTree (enSembl)ENSG00000129194
Phylogenetic Trees/Animal Genes : TreeFamSOX15
HOVERGENO60248
HOGENOMO60248
Homologs : HomoloGeneSOX15
Homology/Alignments : Family Browser (UCSC)SOX15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSOX15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SOX15
dbVarSOX15
ClinVarSOX15
1000_GenomesSOX15 
Exome Variant ServerSOX15
ExAC (Exome Aggregation Consortium)SOX15 (select the gene name)
Genetic variants : HAPMAP6665
Genomic Variants (DGV)SOX15 [DGVbeta]
DECIPHER (Syndromes)17:7491498-7493488  ENSG00000129194
CONAN: Copy Number AnalysisSOX15 
Mutations
ICGC Data PortalSOX15 
TCGA Data PortalSOX15 
Broad Tumor PortalSOX15
OASIS PortalSOX15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSOX15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSOX15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SOX15
DgiDB (Drug Gene Interaction Database)SOX15
DoCM (Curated mutations)SOX15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SOX15 (select a term)
intoGenSOX15
Cancer3DSOX15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601297   
Orphanet
MedgenSOX15
Genetic Testing Registry SOX15
NextProtO60248 [Medical]
TSGene6665
GENETestsSOX15
Huge Navigator SOX15 [HugePedia]
snp3D : Map Gene to Disease6665
BioCentury BCIQSOX15
ClinGenSOX15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6665
Chemical/Pharm GKB GenePA36033
Clinical trialSOX15
Miscellaneous
canSAR (ICR)SOX15 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSOX15
EVEXSOX15
GoPubMedSOX15
iHOPSOX15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:28:40 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.