Identity |
Alias_names | SOX2OT |
SOX2 overlapping transcript (non-protein coding) | |
Alias_symbol (synonym) | DKFZp761J1324 |
NCRNA00043 | |
Other alias | |
HGNC (Hugo) | SOX2-OT |
LocusID (NCBI) | 347689 |
Atlas_Id | 54656 |
Location | 3q26.33 [Link to chromosome band 3q26] |
Location_base_pair | Starts at 181175144 and ends at 181742225 bp from pter ( according to hg38-Dec_2013) |
Fusion genes (updated 2017) | Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands) |
ATP11B (3q26.33) / SOX2-OT (3q26.33) | OSCP1 (1p34.3) / SOX2-OT (3q26.33) | PTGES (9q34.11) / SOX2-OT (3q26.33) | |
SNX29 (16p13.13) / SOX2-OT (3q26.33) | SOX2-OT (3q26.33) / ATL3 (11q12.3) | SOX2-OT (3q26.33) / OSCP1 (1p34.3) | |
SOX2-OT (3q26.33) / SNX29 (16p13.13) | SOX2-OT (3q26.33) / ST14 (11q24.3) | SOX2-OT (3q26.33) / TMEM144 (4q32.1) | |
Note | Non-annotated gene. Preliminary data : if you are an author |
DNA/RNA |
Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 6 ] |
Lung: Translocations in Squamous Cell Carcinoma
t(1;3)(p34;q26) SOX2-OT/OSCP1 t(1;3)(p34;q26) OSCP1/SOX2-OT t(3;3)(q26;q26) ATP11B/SOX2-OT t(3;11)(q26;q13) SOX2-OT/ATL3 t(3;11)(q26;q24) SOX2-OT/ST14 |
External links |
Genes in title | automatic search in PubMed |
REVIEW articles | automatic search in PubMed |
Last year publications | automatic search in PubMed |
© Atlas of Genetics and Cytogenetics in Oncology and Haematology | indexed on : Wed Feb 28 13:38:59 CET 2018 |
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