Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SOX5 (SRY-box transcription factor 5)


Alias (NCBI)L-SOX5
HGNC (Hugo) SOX5
HGNC Alias symbL-SOX5
HGNC Previous nameSRY (sex determining region Y)-box 5
 SRY-box 5
LocusID (NCBI) 6660
Atlas_Id 49803
Location 12p12.1  [Link to chromosome band 12p12]
Location_base_pair Starts at 23529504 and ends at 23584586 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AC011443.1 () / SOX5 (12p12.1)BICD1 (12p11.21) / SOX5 (12p12.1)CP (3q24) / SOX5 (12p12.1)
KIAA1535 () / SOX5 (12p12.1)KIAA1551 (12p11.21) / SOX5 (12p12.1)LRMP (12p12.1) / SOX5 (12p12.1)
SOX5 (12p12.1) / AC007621.1 ()SOX5 (12p12.1) / MANSC1 (12p13.2)SOX5 (12p12.1) / RP11-176H8.1 ()
SOX5 (12p12.1) / SOX5 (12p12.1)SOX5 (12p12.1) / TGFBR2 (3p24.1)TSPAN6 (Xq22.1) / SOX5 (12p12.1)
AC011443.1 SOX5 12p12.1BICD1 12p11.21 / SOX5 12p12.1C12orf35 SOX5 12p12.1
CP 3q24 / SOX5 12p12.1SOX5 12p12.1 AC007621.1SOX5 12p12.1 / MANSC1 12p13.2
SOX5 12p12.1 RP11-176H8.1


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(12;14)(p12;q32) IGH/SOX5

External links

HGNC (Hugo)SOX5   11201
Entrez_Gene (NCBI)SOX5    SRY-box transcription factor 5
GeneCards (Weizmann)SOX5
Ensembl hg19 (Hinxton)ENSG00000134532 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134532 [Gene_View]  ENSG00000134532 [Sequence]  chr12:23529504-23584586 [Contig_View]  SOX5 [Vega]
ICGC DataPortalENSG00000134532
TCGA cBioPortalSOX5
AceView (NCBI)SOX5
Genatlas (Paris)SOX5
SOURCE (Princeton)SOX5
Genetics Home Reference (NIH)SOX5
Genomic and cartography
GoldenPath hg38 (UCSC)SOX5  -     chr12:23529504-23584586 -  12p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SOX5  -     12p12.1   [Description]    (hg19-Feb_2009)
GoldenPathSOX5 - 12p12.1 [CytoView hg19]  SOX5 - 12p12.1 [CytoView hg38]
genome Data Viewer NCBISOX5 [Mapview hg19]  
OMIM604975   616803   
Gene and transcription
Genbank (Entrez)AB081588 AB081589 AK074317 AK096569 AK098610
RefSeq transcript (Entrez)NM_001261414 NM_001261415 NM_001330785 NM_006940 NM_152989 NM_178010
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SOX5
Alternative Splicing GalleryENSG00000134532
Gene ExpressionSOX5 [ NCBI-GEO ]   SOX5 [ EBI - ARRAY_EXPRESS ]   SOX5 [ SEEK ]   SOX5 [ MEM ]
Gene Expression Viewer (FireBrowse)SOX5 [ Firebrowse - Broad ]
GenevisibleExpression of SOX5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6660
GTEX Portal (Tissue expression)SOX5
Human Protein AtlasENSG00000134532-SOX5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SOX5
Blocks (Seattle)SOX5
Human Protein Atlas [tissue]ENSG00000134532-SOX5 [tissue]
IPIIPI00216317   IPI00171247   IPI00221270   IPI00166143   IPI00793790   IPI01011755   IPI01010805   IPI00939555   IPI00791993   IPI01009605   IPI01015475   
Protein Interaction databases
Ontologies - Pathways
PubMed90 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 25 19:47:09 CET 2021

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