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SOX5 (SRY-box transcription factor 5)

Identity

Alias (NCBI)L-SOX5
L-SOX5B
L-SOX5F
LAMSHF
HGNC (Hugo) SOX5
HGNC Alias symbL-SOX5
MGC35153
HGNC Previous nameSRY (sex determining region Y)-box 5
 SRY-box 5
LocusID (NCBI) 6660
Atlas_Id 49803
Location 12p12.1  [Link to chromosome band 12p12]
Location_base_pair Starts at 23529504 and ends at 23584586 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AC011443.1 () / SOX5 (12p12.1)BICD1 (12p11.21) / SOX5 (12p12.1)CP (3q24) / SOX5 (12p12.1)
KIAA1535 () / SOX5 (12p12.1)KIAA1551 (12p11.21) / SOX5 (12p12.1)LRMP (12p12.1) / SOX5 (12p12.1)
SOX5 (12p12.1) / AC007621.1 ()SOX5 (12p12.1) / MANSC1 (12p13.2)SOX5 (12p12.1) / RP11-176H8.1 ()
SOX5 (12p12.1) / SOX5 (12p12.1)SOX5 (12p12.1) / TGFBR2 (3p24.1)TSPAN6 (Xq22.1) / SOX5 (12p12.1)
AC011443.1 SOX5 12p12.1BICD1 12p11.21 / SOX5 12p12.1C12orf35 SOX5 12p12.1
CP 3q24 / SOX5 12p12.1SOX5 12p12.1 AC007621.1SOX5 12p12.1 / MANSC1 12p13.2
SOX5 12p12.1 RP11-176H8.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(12;14)(p12;q32) IGH/SOX5

External links

Nomenclature
HGNC (Hugo)SOX5   11201
Cards
Entrez_Gene (NCBI)SOX5    SRY-box transcription factor 5
AliasesL-SOX5; L-SOX5B; L-SOX5F; LAMSHF
GeneCards (Weizmann)SOX5
Ensembl hg19 (Hinxton)ENSG00000134532 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134532 [Gene_View]  ENSG00000134532 [Sequence]  chr12:23529504-23584586 [Contig_View]  SOX5 [Vega]
ICGC DataPortalENSG00000134532
TCGA cBioPortalSOX5
AceView (NCBI)SOX5
Genatlas (Paris)SOX5
SOURCE (Princeton)SOX5
Genetics Home Reference (NIH)SOX5
Genomic and cartography
GoldenPath hg38 (UCSC)SOX5  -     chr12:23529504-23584586 -  12p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SOX5  -     12p12.1   [Description]    (hg19-Feb_2009)
GoldenPathSOX5 - 12p12.1 [CytoView hg19]  SOX5 - 12p12.1 [CytoView hg38]
ImmunoBaseENSG00000134532
genome Data Viewer NCBISOX5 [Mapview hg19]  
OMIM604975   616803   
Gene and transcription
Genbank (Entrez)AB081588 AB081589 AK074317 AK096569 AK098610
RefSeq transcript (Entrez)NM_001261414 NM_001261415 NM_001330785 NM_006940 NM_152989 NM_178010
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SOX5
Alternative Splicing GalleryENSG00000134532
Gene ExpressionSOX5 [ NCBI-GEO ]   SOX5 [ EBI - ARRAY_EXPRESS ]   SOX5 [ SEEK ]   SOX5 [ MEM ]
Gene Expression Viewer (FireBrowse)SOX5 [ Firebrowse - Broad ]
GenevisibleExpression of SOX5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6660
GTEX Portal (Tissue expression)SOX5
Human Protein AtlasENSG00000134532-SOX5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SOX5
Blocks (Seattle)SOX5
Human Protein Atlas [tissue]ENSG00000134532-SOX5 [tissue]
HPRD18086
IPIIPI00216317   IPI00171247   IPI00221270   IPI00166143   IPI00793790   IPI01011755   IPI01010805   IPI00939555   IPI00791993   IPI01009605   IPI01015475   
Protein Interaction databases
BioGRIDSOX5
STRING (EMBL)SOX5
ZODIACSOX5
Ontologies - Pathways
Litterature
PubMed90 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSOX5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 25 19:47:09 CET 2021
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