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SOX5-AS1 (SOX5 antisense RNA 1)

Identity

Other alias-
HGNC (Hugo) SOX5-AS1
LocusID (NCBI) 101928471
Atlas_Id 79749
Location 12p12.1  [Link to chromosome band 12p12]
Location_base_pair Starts at 24223271 and ends at 24237965 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SOX5-AS1   53311
Cards
Entrez_Gene (NCBI)SOX5-AS1  101928471  SOX5 antisense RNA 1
Aliases
GeneCards (Weizmann)SOX5-AS1
Ensembl hg19 (Hinxton)ENSG00000256120 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256120 [Gene_View]  chr12:24223271-24237965 [Contig_View]  SOX5-AS1 [Vega]
ICGC DataPortalENSG00000256120
TCGA cBioPortalSOX5-AS1
AceView (NCBI)SOX5-AS1
Genatlas (Paris)SOX5-AS1
WikiGenes101928471
SOURCE (Princeton)SOX5-AS1
Genetics Home Reference (NIH)SOX5-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SOX5-AS1  -     chr12:24223271-24237965 +  12p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SOX5-AS1  -     12p12.1   [Description]    (hg19-Feb_2009)
EnsemblSOX5-AS1 - 12p12.1 [CytoView hg19]  SOX5-AS1 - 12p12.1 [CytoView hg38]
Mapping of homologs : NCBISOX5-AS1 [Mapview hg19]  SOX5-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX106967 CR744081 DB076822
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SOX5-AS1
Cluster EST : UnigeneHs.569156 [ NCBI ]
CGAP (NCI)Hs.569156
Alternative Splicing GalleryENSG00000256120
Gene ExpressionSOX5-AS1 [ NCBI-GEO ]   SOX5-AS1 [ EBI - ARRAY_EXPRESS ]   SOX5-AS1 [ SEEK ]   SOX5-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SOX5-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101928471
GTEX Portal (Tissue expression)SOX5-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SOX5-AS1
DMDM Disease mutations101928471
Blocks (Seattle)SOX5-AS1
Human Protein AtlasENSG00000256120
Protein Interaction databases
FunCoupENSG00000256120
BioGRIDSOX5-AS1
STRING (EMBL)SOX5-AS1
ZODIACSOX5-AS1
Ontologies - Pathways
Huge Navigator SOX5-AS1 [HugePedia]
snp3D : Map Gene to Disease101928471
BioCentury BCIQSOX5-AS1
ClinGenSOX5-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101928471
Clinical trialSOX5-AS1
Miscellaneous
canSAR (ICR)SOX5-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSOX5-AS1
EVEXSOX5-AS1
GoPubMedSOX5-AS1
iHOPSOX5-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 13:40:08 CEST 2017

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