Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SOX9-AS1 (SOX9 antisense RNA 1)

Identity

Alias_symbol (synonym)FLJ37644
Other alias-
HGNC (Hugo) SOX9-AS1
LocusID (NCBI) 400618
Atlas_Id 74084
Location 17q24.3  [Link to chromosome band 17q24]
Location_base_pair Starts at 70076079 and ends at 70116934 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SOX9-AS1   49321
Cards
Entrez_Gene (NCBI)SOX9-AS1  400618  SOX9 antisense RNA 1
Aliases
GeneCards (Weizmann)SOX9-AS1
Ensembl hg19 (Hinxton)ENSG00000234899 [Gene_View]  chr17:70076079-70116934 [Contig_View]  SOX9-AS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000234899 [Gene_View]  chr17:70076079-70116934 [Contig_View]  SOX9-AS1 [Vega]
ICGC DataPortalENSG00000234899
TCGA cBioPortalSOX9-AS1
AceView (NCBI)SOX9-AS1
Genatlas (Paris)SOX9-AS1
WikiGenes400618
SOURCE (Princeton)SOX9-AS1
Genetics Home Reference (NIH)SOX9-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)SOX9-AS1  -     chr17:70076079-70116934 -  17q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SOX9-AS1  -     17q24.3   [Description]    (hg38-Dec_2013)
EnsemblSOX9-AS1 - 17q24.3 [CytoView hg19]  SOX9-AS1 - 17q24.3 [CytoView hg38]
Mapping of homologs : NCBISOX9-AS1 [Mapview hg19]  SOX9-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056229 AK094963 AL833139
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)SOX9-AS1
Cluster EST : UnigeneHs.657374 [ NCBI ]
CGAP (NCI)Hs.657374
Alternative Splicing GalleryENSG00000234899
Gene ExpressionSOX9-AS1 [ NCBI-GEO ]   SOX9-AS1 [ EBI - ARRAY_EXPRESS ]   SOX9-AS1 [ SEEK ]   SOX9-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SOX9-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)400618
GTEX Portal (Tissue expression)SOX9-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SOX9-AS1
DMDM Disease mutations400618
Blocks (Seattle)SOX9-AS1
Human Protein AtlasENSG00000234899
Protein Interaction databases
FunCoupENSG00000234899
BioGRIDSOX9-AS1
STRING (EMBL)SOX9-AS1
ZODIACSOX9-AS1
Ontologies - Pathways
Huge Navigator SOX9-AS1 [HugePedia]
snp3D : Map Gene to Disease400618
BioCentury BCIQSOX9-AS1
ClinGenSOX9-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400618
Clinical trialSOX9-AS1
Miscellaneous
canSAR (ICR)SOX9-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSOX9-AS1
EVEXSOX9-AS1
GoPubMedSOX9-AS1
iHOPSOX9-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:46:11 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.