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SP110 (SP110 nuclear body protein)

Identity

Alias_namesIFI41
IFI75
interferon-induced protein 41, 30kD
Other aliasIPR1
VODI
HGNC (Hugo) SP110
LocusID (NCBI) 3431
Atlas_Id 74085
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 230176473 and ends at 230225729 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC16A14 (2q36.3) / SP110 (2q37.1)SP110 (2q37.1) / SP110 (2q37.1)SYNE2 (14q23.2) / SP110 (2q37.1)
TRIP12 (2q36.3) / SP110 (2q37.1)TRIP12 SP110SLC16A14 SP110

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SP110   5401
LRG (Locus Reference Genomic)LRG_109
Cards
Entrez_Gene (NCBI)SP110  3431  SP110 nuclear body protein
AliasesIFI41; IFI75; IPR1; VODI
GeneCards (Weizmann)SP110
Ensembl hg19 (Hinxton)ENSG00000135899 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135899 [Gene_View]  chr2:230176473-230225729 [Contig_View]  SP110 [Vega]
ICGC DataPortalENSG00000135899
TCGA cBioPortalSP110
AceView (NCBI)SP110
Genatlas (Paris)SP110
WikiGenes3431
SOURCE (Princeton)SP110
Genetics Home Reference (NIH)SP110
Genomic and cartography
GoldenPath hg38 (UCSC)SP110  -     chr2:230176473-230225729 -  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SP110  -     2q37.1   [Description]    (hg19-Feb_2009)
EnsemblSP110 - 2q37.1 [CytoView hg19]  SP110 - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBISP110 [Mapview hg19]  SP110 [Mapview hg38]
OMIM235550   604457   607948   
Gene and transcription
Genbank (Entrez)AF280094 AF280095 AK026488 AK128274 AK301097
RefSeq transcript (Entrez)NM_001185015 NM_004509 NM_004510 NM_080424
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SP110
Cluster EST : UnigeneHs.145150 [ NCBI ]
CGAP (NCI)Hs.145150
Alternative Splicing GalleryENSG00000135899
Gene ExpressionSP110 [ NCBI-GEO ]   SP110 [ EBI - ARRAY_EXPRESS ]   SP110 [ SEEK ]   SP110 [ MEM ]
Gene Expression Viewer (FireBrowse)SP110 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3431
GTEX Portal (Tissue expression)SP110
Human Protein AtlasENSG00000135899-SP110 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HB58   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HB58  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HB58
Splice isoforms : SwissVarQ9HB58
PhosPhoSitePlusQ9HB58
Domaine pattern : Prosite (Expaxy)HSR (PS51414)    SAND (PS50864)    ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)   
Domains : Interpro (EBI)Bromodomain    HSR_dom    SAND_dom    SAND_dom-like    Zinc_finger_PHD-type_CS    Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)HSR (PF03172)    SAND (PF01342)   
Domain families : Pfam (NCBI)pfam03172    pfam01342   
Domain families : Smart (EMBL)BROMO (SM00297)  PHD (SM00249)  SAND (SM00258)  
Conserved Domain (NCBI)SP110
DMDM Disease mutations3431
Blocks (Seattle)SP110
SuperfamilyQ9HB58
Human Protein Atlas [tissue]ENSG00000135899-SP110 [tissue]
Peptide AtlasQ9HB58
HPRD06832
IPIIPI00162549   IPI00398959   IPI00873254   IPI00220746   IPI00913939   IPI00982617   IPI00472430   IPI00917971   IPI00981974   IPI00916149   
Protein Interaction databases
DIP (DOE-UCLA)Q9HB58
IntAct (EBI)Q9HB58
FunCoupENSG00000135899
BioGRIDSP110
STRING (EMBL)SP110
ZODIACSP110
Ontologies - Pathways
QuickGOQ9HB58
Ontology : AmiGODNA binding  signal transducer activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  signal transduction  zinc ion binding  viral process  
Ontology : EGO-EBIDNA binding  signal transducer activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  signal transduction  zinc ion binding  viral process  
NDEx NetworkSP110
Atlas of Cancer Signalling NetworkSP110
Wikipedia pathwaysSP110
Orthology - Evolution
OrthoDB3431
GeneTree (enSembl)ENSG00000135899
Phylogenetic Trees/Animal Genes : TreeFamSP110
HOVERGENQ9HB58
HOGENOMQ9HB58
Homologs : HomoloGeneSP110
Homology/Alignments : Family Browser (UCSC)SP110
Gene fusions - Rearrangements
Fusion: TCGA_MDACCTRIP12 SP110
Fusion: TCGA_MDACCSLC16A14 SP110
Tumor Fusion PortalSP110
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSP110 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SP110
dbVarSP110
ClinVarSP110
1000_GenomesSP110 
Exome Variant ServerSP110
ExAC (Exome Aggregation Consortium)ENSG00000135899
GNOMAD BrowserENSG00000135899
Genetic variants : HAPMAP3431
Genomic Variants (DGV)SP110 [DGVbeta]
DECIPHERSP110 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSP110 
Mutations
ICGC Data PortalSP110 
TCGA Data PortalSP110 
Broad Tumor PortalSP110
OASIS PortalSP110 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSP110  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSP110
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)TBsLVD Tuberculosis susceptibility Locus Variation Database
BioMutasearch SP110
DgiDB (Drug Gene Interaction Database)SP110
DoCM (Curated mutations)SP110 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SP110 (select a term)
intoGenSP110
Cancer3DSP110(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM235550    604457    607948   
Orphanet11152   
DisGeNETSP110
MedgenSP110
Genetic Testing Registry SP110
NextProtQ9HB58 [Medical]
TSGene3431
GENETestsSP110
Target ValidationSP110
Huge Navigator SP110 [HugePedia]
snp3D : Map Gene to Disease3431
BioCentury BCIQSP110
ClinGenSP110
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3431
Chemical/Pharm GKB GenePA35104
Clinical trialSP110
Miscellaneous
canSAR (ICR)SP110 (select the gene name)
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSP110
EVEXSP110
GoPubMedSP110
iHOPSP110
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:06:29 CET 2017

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