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SP140L (SP140 nuclear body protein-like)

Identity

Alias_namesSP140 nuclear body protein-like
Other alias-
HGNC (Hugo) SP140L
LocusID (NCBI) 93349
Atlas_Id 74087
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 231191895 and ends at 231268445 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AGAP1 (2q37.2) / SP140L (2q37.1)PSMD1 (2q37.1) / SP140L (2q37.1)SP140L (2q37.1) / ITM2C (2q37.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SP140L   25105
Cards
Entrez_Gene (NCBI)SP140L  93349  SP140 nuclear body protein-like
Aliases
GeneCards (Weizmann)SP140L
Ensembl hg19 (Hinxton)ENSG00000185404 [Gene_View]  chr2:231191895-231268445 [Contig_View]  SP140L [Vega]
Ensembl hg38 (Hinxton)ENSG00000185404 [Gene_View]  chr2:231191895-231268445 [Contig_View]  SP140L [Vega]
ICGC DataPortalENSG00000185404
TCGA cBioPortalSP140L
AceView (NCBI)SP140L
Genatlas (Paris)SP140L
WikiGenes93349
SOURCE (Princeton)SP140L
Genetics Home Reference (NIH)SP140L
Genomic and cartography
GoldenPath hg19 (UCSC)SP140L  -     chr2:231191895-231268445 +  2q37.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SP140L  -     2q37.1   [Description]    (hg38-Dec_2013)
EnsemblSP140L - 2q37.1 [CytoView hg19]  SP140L - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBISP140L [Mapview hg19]  SP140L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023116 AU130836 BC004921 BC105007 BC143624
RefSeq transcript (Entrez)NM_001308162 NM_001308163 NM_138402
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)SP140L
Cluster EST : UnigeneHs.589661 [ NCBI ]
CGAP (NCI)Hs.589661
Alternative Splicing GalleryENSG00000185404
Gene ExpressionSP140L [ NCBI-GEO ]   SP140L [ EBI - ARRAY_EXPRESS ]   SP140L [ SEEK ]   SP140L [ MEM ]
Gene Expression Viewer (FireBrowse)SP140L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93349
GTEX Portal (Tissue expression)SP140L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H930   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H930  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H930
Splice isoforms : SwissVarQ9H930
PhosPhoSitePlusQ9H930
Domaine pattern : Prosite (Expaxy)BROMODOMAIN_2 (PS50014)    HSR (PS51414)    SAND (PS50864)    ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)   
Domains : Interpro (EBI)Bromodomain    HSR_dom    SAND_dom    SAND_dom-like    Zinc_finger_PHD-type_CS    Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)Bromodomain (PF00439)    PHD (PF00628)    SAND (PF01342)    Sp100 (PF03172)   
Domain families : Pfam (NCBI)pfam00439    pfam00628    pfam01342    pfam03172   
Domain families : Smart (EMBL)BROMO (SM00297)  PHD (SM00249)  SAND (SM00258)  
Conserved Domain (NCBI)SP140L
DMDM Disease mutations93349
Blocks (Seattle)SP140L
SuperfamilyQ9H930
Human Protein AtlasENSG00000185404
Peptide AtlasQ9H930
HPRD14299
IPIIPI00027693   IPI00719187   IPI00884908   IPI01009049   
Protein Interaction databases
DIP (DOE-UCLA)Q9H930
IntAct (EBI)Q9H930
FunCoupENSG00000185404
BioGRIDSP140L
STRING (EMBL)SP140L
ZODIACSP140L
Ontologies - Pathways
QuickGOQ9H930
Ontology : AmiGODNA binding  chromatin binding  nucleus  chromatin remodeling  regulation of transcription, DNA-templated  zinc ion binding  
Ontology : EGO-EBIDNA binding  chromatin binding  nucleus  chromatin remodeling  regulation of transcription, DNA-templated  zinc ion binding  
NDEx NetworkSP140L
Atlas of Cancer Signalling NetworkSP140L
Wikipedia pathwaysSP140L
Orthology - Evolution
OrthoDB93349
GeneTree (enSembl)ENSG00000185404
Phylogenetic Trees/Animal Genes : TreeFamSP140L
HOVERGENQ9H930
HOGENOMQ9H930
Homologs : HomoloGeneSP140L
Homology/Alignments : Family Browser (UCSC)SP140L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSP140L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SP140L
dbVarSP140L
ClinVarSP140L
1000_GenomesSP140L 
Exome Variant ServerSP140L
ExAC (Exome Aggregation Consortium)SP140L (select the gene name)
Genetic variants : HAPMAP93349
Genomic Variants (DGV)SP140L [DGVbeta]
DECIPHER (Syndromes)2:231191895-231268445  ENSG00000185404
CONAN: Copy Number AnalysisSP140L 
Mutations
ICGC Data PortalSP140L 
TCGA Data PortalSP140L 
Broad Tumor PortalSP140L
OASIS PortalSP140L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSP140L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSP140L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SP140L
DgiDB (Drug Gene Interaction Database)SP140L
DoCM (Curated mutations)SP140L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SP140L (select a term)
intoGenSP140L
Cancer3DSP140L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSP140L
Genetic Testing Registry SP140L
NextProtQ9H930 [Medical]
TSGene93349
GENETestsSP140L
Huge Navigator SP140L [HugePedia]
snp3D : Map Gene to Disease93349
BioCentury BCIQSP140L
ClinGenSP140L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93349
Chemical/Pharm GKB GenePA164726206
Clinical trialSP140L
Miscellaneous
canSAR (ICR)SP140L (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSP140L
EVEXSP140L
GoPubMedSP140L
iHOPSP140L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:12 CET 2017

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