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SP2 (Sp2 transcription factor)

Identity

Alias_symbol (synonym)KIAA0048
Other alias-
HGNC (Hugo) SP2
LocusID (NCBI) 6668
Atlas_Id 54936
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 45973516 and ends at 46006323 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANK3 (10q21.2) / SP2 (17q21.32)SP2 (17q21.32) / SP2 (17q21.32)ANK3 10q21.2 / SP2 17q21.32

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SP2   11207
Cards
Entrez_Gene (NCBI)SP2  6668  Sp2 transcription factor
Aliases
GeneCards (Weizmann)SP2
Ensembl hg19 (Hinxton)ENSG00000167182 [Gene_View]  chr17:45973516-46006323 [Contig_View]  SP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167182 [Gene_View]  chr17:45973516-46006323 [Contig_View]  SP2 [Vega]
ICGC DataPortalENSG00000167182
TCGA cBioPortalSP2
AceView (NCBI)SP2
Genatlas (Paris)SP2
WikiGenes6668
SOURCE (Princeton)SP2
Genetics Home Reference (NIH)SP2
Genomic and cartography
GoldenPath hg19 (UCSC)SP2  -     chr17:45973516-46006323 +  17q21.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SP2  -     17q21.32   [Description]    (hg38-Dec_2013)
EnsemblSP2 - 17q21.32 [CytoView hg19]  SP2 - 17q21.32 [CytoView hg38]
Mapping of homologs : NCBISP2 [Mapview hg19]  SP2 [Mapview hg38]
OMIM601801   
Gene and transcription
Genbank (Entrez)AK097532 BC005914 BC016680 BC033814 D28588
RefSeq transcript (Entrez)NM_003110
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)SP2
Cluster EST : UnigeneHs.514276 [ NCBI ]
CGAP (NCI)Hs.514276
Alternative Splicing GalleryENSG00000167182
Gene ExpressionSP2 [ NCBI-GEO ]   SP2 [ EBI - ARRAY_EXPRESS ]   SP2 [ SEEK ]   SP2 [ MEM ]
Gene Expression Viewer (FireBrowse)SP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6668
GTEX Portal (Tissue expression)SP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ02086   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ02086  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ02086
Splice isoforms : SwissVarQ02086
PhosPhoSitePlusQ02086
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Sp1_fam    SP2_TF    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)SP2
DMDM Disease mutations6668
Blocks (Seattle)SP2
SuperfamilyQ02086
Human Protein AtlasENSG00000167182
Peptide AtlasQ02086
HPRD03481
IPIIPI00744064   IPI00333077   IPI00005476   
Protein Interaction databases
DIP (DOE-UCLA)Q02086
IntAct (EBI)Q02086
FunCoupENSG00000167182
BioGRIDSP2
STRING (EMBL)SP2
ZODIACSP2
Ontologies - Pathways
QuickGOQ02086
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  protein binding  nucleus  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  immune response  multicellular organism growth  histone deacetylase binding  metal ion binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  protein binding  nucleus  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  immune response  multicellular organism growth  histone deacetylase binding  metal ion binding  
NDEx NetworkSP2
Atlas of Cancer Signalling NetworkSP2
Wikipedia pathwaysSP2
Orthology - Evolution
OrthoDB6668
GeneTree (enSembl)ENSG00000167182
Phylogenetic Trees/Animal Genes : TreeFamSP2
HOVERGENQ02086
HOGENOMQ02086
Homologs : HomoloGeneSP2
Homology/Alignments : Family Browser (UCSC)SP2
Gene fusions - Rearrangements
Fusion : MitelmanANK3/SP2 [10q21.2/17q21.32]  [t(10;17)(q21;q21)]  
Fusion: TCGAANK3 10q21.2 SP2 17q21.32 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SP2
dbVarSP2
ClinVarSP2
1000_GenomesSP2 
Exome Variant ServerSP2
ExAC (Exome Aggregation Consortium)SP2 (select the gene name)
Genetic variants : HAPMAP6668
Genomic Variants (DGV)SP2 [DGVbeta]
DECIPHER (Syndromes)17:45973516-46006323  ENSG00000167182
CONAN: Copy Number AnalysisSP2 
Mutations
ICGC Data PortalSP2 
TCGA Data PortalSP2 
Broad Tumor PortalSP2
OASIS PortalSP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SP2
DgiDB (Drug Gene Interaction Database)SP2
DoCM (Curated mutations)SP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SP2 (select a term)
intoGenSP2
Cancer3DSP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601801   
Orphanet
MedgenSP2
Genetic Testing Registry SP2
NextProtQ02086 [Medical]
TSGene6668
GENETestsSP2
Huge Navigator SP2 [HugePedia]
snp3D : Map Gene to Disease6668
BioCentury BCIQSP2
ClinGenSP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6668
Chemical/Pharm GKB GenePA36044
Clinical trialSP2
Miscellaneous
canSAR (ICR)SP2 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSP2
EVEXSP2
GoPubMedSP2
iHOPSP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:20:29 CEST 2017

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