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SP5 (Sp5 transcription factor)

Identity

Other alias-
HGNC (Hugo) SP5
LocusID (NCBI) 389058
Atlas_Id 46167
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 170715347 and ends at 170717988 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SP5   14529
Cards
Entrez_Gene (NCBI)SP5  389058  Sp5 transcription factor
Aliases
GeneCards (Weizmann)SP5
Ensembl hg19 (Hinxton)ENSG00000204335 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204335 [Gene_View]  chr2:170715347-170717988 [Contig_View]  SP5 [Vega]
ICGC DataPortalENSG00000204335
TCGA cBioPortalSP5
AceView (NCBI)SP5
Genatlas (Paris)SP5
WikiGenes389058
SOURCE (Princeton)SP5
Genetics Home Reference (NIH)SP5
Genomic and cartography
GoldenPath hg38 (UCSC)SP5  -     chr2:170715347-170717988 +  2q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SP5  -     2q31.1   [Description]    (hg19-Feb_2009)
EnsemblSP5 - 2q31.1 [CytoView hg19]  SP5 - 2q31.1 [CytoView hg38]
Mapping of homologs : NCBISP5 [Mapview hg19]  SP5 [Mapview hg38]
OMIM609391   
Gene and transcription
Genbank (Entrez)AB096175 AW450640 BC069026 BC172750 BQ064677
RefSeq transcript (Entrez)NM_001003845
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SP5
Cluster EST : UnigeneHs.368802 [ NCBI ]
CGAP (NCI)Hs.368802
Alternative Splicing GalleryENSG00000204335
Gene ExpressionSP5 [ NCBI-GEO ]   SP5 [ EBI - ARRAY_EXPRESS ]   SP5 [ SEEK ]   SP5 [ MEM ]
Gene Expression Viewer (FireBrowse)SP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389058
GTEX Portal (Tissue expression)SP5
Human Protein AtlasENSG00000204335-SP5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6BEB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6BEB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6BEB4
Splice isoforms : SwissVarQ6BEB4
PhosPhoSitePlusQ6BEB4
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)SP5
DMDM Disease mutations389058
Blocks (Seattle)SP5
SuperfamilyQ6BEB4
Human Protein Atlas [tissue]ENSG00000204335-SP5 [tissue]
Peptide AtlasQ6BEB4
HPRD18088
IPIIPI00374189   
Protein Interaction databases
DIP (DOE-UCLA)Q6BEB4
IntAct (EBI)Q6BEB4
FunCoupENSG00000204335
BioGRIDSP5
STRING (EMBL)SP5
ZODIACSP5
Ontologies - Pathways
QuickGOQ6BEB4
Ontology : AmiGORNA polymerase II regulatory region sequence-specific DNA binding  RNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  post-anal tail morphogenesis  metal ion binding  bone morphogenesis  cellular response to organic cyclic compound  
Ontology : EGO-EBIRNA polymerase II regulatory region sequence-specific DNA binding  RNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  post-anal tail morphogenesis  metal ion binding  bone morphogenesis  cellular response to organic cyclic compound  
NDEx NetworkSP5
Atlas of Cancer Signalling NetworkSP5
Wikipedia pathwaysSP5
Orthology - Evolution
OrthoDB389058
GeneTree (enSembl)ENSG00000204335
Phylogenetic Trees/Animal Genes : TreeFamSP5
HOVERGENQ6BEB4
HOGENOMQ6BEB4
Homologs : HomoloGeneSP5
Homology/Alignments : Family Browser (UCSC)SP5
Gene fusions - Rearrangements
Tumor Fusion PortalSP5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SP5
dbVarSP5
ClinVarSP5
1000_GenomesSP5 
Exome Variant ServerSP5
ExAC (Exome Aggregation Consortium)ENSG00000204335
GNOMAD BrowserENSG00000204335
Genetic variants : HAPMAP389058
Genomic Variants (DGV)SP5 [DGVbeta]
DECIPHERSP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSP5 
Mutations
ICGC Data PortalSP5 
TCGA Data PortalSP5 
Broad Tumor PortalSP5
OASIS PortalSP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSP5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SP5
DgiDB (Drug Gene Interaction Database)SP5
DoCM (Curated mutations)SP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SP5 (select a term)
intoGenSP5
Cancer3DSP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609391   
Orphanet
DisGeNETSP5
MedgenSP5
Genetic Testing Registry SP5
NextProtQ6BEB4 [Medical]
TSGene389058
GENETestsSP5
Target ValidationSP5
Huge Navigator SP5 [HugePedia]
snp3D : Map Gene to Disease389058
BioCentury BCIQSP5
ClinGenSP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389058
Chemical/Pharm GKB GenePA134875843
Clinical trialSP5
Miscellaneous
canSAR (ICR)SP5 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSP5
EVEXSP5
GoPubMedSP5
iHOPSP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:36:05 CET 2017

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