Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SP6 (Sp6 transcription factor)

Identity

Alias_symbol (synonym)KLF14
Epfn
Other aliasEPFN
EPIPROFIN
HGNC (Hugo) SP6
LocusID (NCBI) 80320
Atlas_Id 56341
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 45922280 and ends at 45928516 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SP6   14530
Cards
Entrez_Gene (NCBI)SP6  80320  Sp6 transcription factor
AliasesEPFN; EPIPROFIN; KLF14
GeneCards (Weizmann)SP6
Ensembl hg19 (Hinxton)ENSG00000189120 [Gene_View]  chr17:45922280-45928516 [Contig_View]  SP6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000189120 [Gene_View]  chr17:45922280-45928516 [Contig_View]  SP6 [Vega]
ICGC DataPortalENSG00000189120
TCGA cBioPortalSP6
AceView (NCBI)SP6
Genatlas (Paris)SP6
WikiGenes80320
SOURCE (Princeton)SP6
Genetics Home Reference (NIH)SP6
Genomic and cartography
GoldenPath hg19 (UCSC)SP6  -     chr17:45922280-45928516 -  17q21.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SP6  -     17q21.32   [Description]    (hg38-Dec_2013)
EnsemblSP6 - 17q21.32 [CytoView hg19]  SP6 - 17q21.32 [CytoView hg38]
Mapping of homologs : NCBISP6 [Mapview hg19]  SP6 [Mapview hg38]
OMIM608613   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001258248 NM_199262
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SP6
Cluster EST : UnigeneHs.253603 [ NCBI ]
CGAP (NCI)Hs.253603
Alternative Splicing GalleryENSG00000189120
Gene ExpressionSP6 [ NCBI-GEO ]   SP6 [ EBI - ARRAY_EXPRESS ]   SP6 [ SEEK ]   SP6 [ MEM ]
Gene Expression Viewer (FireBrowse)SP6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80320
GTEX Portal (Tissue expression)SP6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SY56   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SY56  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SY56
Splice isoforms : SwissVarQ3SY56
PhosPhoSitePlusQ3SY56
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Sp1_fam    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)SP6
DMDM Disease mutations80320
Blocks (Seattle)SP6
SuperfamilyQ3SY56
Human Protein AtlasENSG00000189120
Peptide AtlasQ3SY56
HPRD12269
IPIIPI00398082   
Protein Interaction databases
DIP (DOE-UCLA)Q3SY56
IntAct (EBI)Q3SY56
FunCoupENSG00000189120
BioGRIDSP6
STRING (EMBL)SP6
ZODIACSP6
Ontologies - Pathways
QuickGOQ3SY56
Ontology : AmiGODNA binding  nucleus  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  positive regulation of cell proliferation  regulation of odontogenesis  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  positive regulation of cell proliferation  regulation of odontogenesis  metal ion binding  
NDEx NetworkSP6
Atlas of Cancer Signalling NetworkSP6
Wikipedia pathwaysSP6
Orthology - Evolution
OrthoDB80320
GeneTree (enSembl)ENSG00000189120
Phylogenetic Trees/Animal Genes : TreeFamSP6
HOVERGENQ3SY56
HOGENOMQ3SY56
Homologs : HomoloGeneSP6
Homology/Alignments : Family Browser (UCSC)SP6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SP6
dbVarSP6
ClinVarSP6
1000_GenomesSP6 
Exome Variant ServerSP6
ExAC (Exome Aggregation Consortium)SP6 (select the gene name)
Genetic variants : HAPMAP80320
Genomic Variants (DGV)SP6 [DGVbeta]
DECIPHER (Syndromes)17:45922280-45928516  ENSG00000189120
CONAN: Copy Number AnalysisSP6 
Mutations
ICGC Data PortalSP6 
TCGA Data PortalSP6 
Broad Tumor PortalSP6
OASIS PortalSP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSP6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSP6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SP6
DgiDB (Drug Gene Interaction Database)SP6
DoCM (Curated mutations)SP6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SP6 (select a term)
intoGenSP6
Cancer3DSP6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608613   
Orphanet
MedgenSP6
Genetic Testing Registry SP6
NextProtQ3SY56 [Medical]
TSGene80320
GENETestsSP6
Huge Navigator SP6 [HugePedia]
snp3D : Map Gene to Disease80320
BioCentury BCIQSP6
ClinGenSP6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80320
Chemical/Pharm GKB GenePA37892
Clinical trialSP6
Miscellaneous
canSAR (ICR)SP6 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSP6
EVEXSP6
GoPubMedSP6
iHOPSP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:28:44 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.