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SP7 (Sp7 transcription factor)

Identity

Alias_symbol (synonym)osterix
OSX
Other aliasOI11
OI12
HGNC (Hugo) SP7
LocusID (NCBI) 121340
Atlas_Id 52051
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 53326576 and ends at 53336383 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SP7   17321
Cards
Entrez_Gene (NCBI)SP7  121340  Sp7 transcription factor
AliasesOI11; OI12; OSX; osterix
GeneCards (Weizmann)SP7
Ensembl hg19 (Hinxton)ENSG00000170374 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170374 [Gene_View]  chr12:53326576-53336383 [Contig_View]  SP7 [Vega]
ICGC DataPortalENSG00000170374
TCGA cBioPortalSP7
AceView (NCBI)SP7
Genatlas (Paris)SP7
WikiGenes121340
SOURCE (Princeton)SP7
Genetics Home Reference (NIH)SP7
Genomic and cartography
GoldenPath hg38 (UCSC)SP7  -     chr12:53326576-53336383 -  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SP7  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblSP7 - 12q13.13 [CytoView hg19]  SP7 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBISP7 [Mapview hg19]  SP7 [Mapview hg38]
OMIM606633   613849   
Gene and transcription
Genbank (Entrez)AF466179 AF477981 AK128520 AY150673 AY150674
RefSeq transcript (Entrez)NM_001173467 NM_001300837 NM_152860
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SP7
Cluster EST : UnigeneHs.742807 [ NCBI ]
CGAP (NCI)Hs.742807
Alternative Splicing GalleryENSG00000170374
Gene ExpressionSP7 [ NCBI-GEO ]   SP7 [ EBI - ARRAY_EXPRESS ]   SP7 [ SEEK ]   SP7 [ MEM ]
Gene Expression Viewer (FireBrowse)SP7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)121340
GTEX Portal (Tissue expression)SP7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDD2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDD2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDD2
Splice isoforms : SwissVarQ8TDD2
PhosPhoSitePlusQ8TDD2
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)SP7
DMDM Disease mutations121340
Blocks (Seattle)SP7
SuperfamilyQ8TDD2
Human Protein AtlasENSG00000170374
Peptide AtlasQ8TDD2
HPRD05971
IPIIPI00152511   IPI01014775   IPI01021455   
Protein Interaction databases
DIP (DOE-UCLA)Q8TDD2
IntAct (EBI)Q8TDD2
FunCoupENSG00000170374
BioGRIDSP7
STRING (EMBL)SP7
ZODIACSP7
Ontologies - Pathways
QuickGOQ8TDD2
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  osteoblast differentiation  osteoblast differentiation  DNA binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  DEAD/H-box RNA helicase binding  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  hematopoietic stem cell differentiation  positive regulation of stem cell differentiation  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  osteoblast differentiation  osteoblast differentiation  DNA binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  DEAD/H-box RNA helicase binding  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  hematopoietic stem cell differentiation  positive regulation of stem cell differentiation  
NDEx NetworkSP7
Atlas of Cancer Signalling NetworkSP7
Wikipedia pathwaysSP7
Orthology - Evolution
OrthoDB121340
GeneTree (enSembl)ENSG00000170374
Phylogenetic Trees/Animal Genes : TreeFamSP7
HOVERGENQ8TDD2
HOGENOMQ8TDD2
Homologs : HomoloGeneSP7
Homology/Alignments : Family Browser (UCSC)SP7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSP7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SP7
dbVarSP7
ClinVarSP7
1000_GenomesSP7 
Exome Variant ServerSP7
ExAC (Exome Aggregation Consortium)SP7 (select the gene name)
Genetic variants : HAPMAP121340
Genomic Variants (DGV)SP7 [DGVbeta]
DECIPHERSP7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSP7 
Mutations
ICGC Data PortalSP7 
TCGA Data PortalSP7 
Broad Tumor PortalSP7
OASIS PortalSP7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSP7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSP7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Osteogenesis Imperfecta Variant Database
BioMutasearch SP7
DgiDB (Drug Gene Interaction Database)SP7
DoCM (Curated mutations)SP7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SP7 (select a term)
intoGenSP7
Cancer3DSP7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606633    613849   
Orphanet18794   
MedgenSP7
Genetic Testing Registry SP7
NextProtQ8TDD2 [Medical]
TSGene121340
GENETestsSP7
Target ValidationSP7
Huge Navigator SP7 [HugePedia]
snp3D : Map Gene to Disease121340
BioCentury BCIQSP7
ClinGenSP7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD121340
Chemical/Pharm GKB GenePA134917046
Clinical trialSP7
Miscellaneous
canSAR (ICR)SP7 (select the gene name)
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSP7
EVEXSP7
GoPubMedSP7
iHOPSP7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:32:34 CEST 2017

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