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SP8 (Sp8 transcription factor)

Identity

Other aliasBTD
HGNC (Hugo) SP8
LocusID (NCBI) 221833
Atlas_Id 74091
Location 7p21.1  [Link to chromosome band 7p21]
Location_base_pair Starts at 20782274 and ends at 20786889 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SP8   19196
Cards
Entrez_Gene (NCBI)SP8  221833  Sp8 transcription factor
AliasesBTD
GeneCards (Weizmann)SP8
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:20782274-20786889 [Contig_View]  SP8 [Vega]
TCGA cBioPortalSP8
AceView (NCBI)SP8
Genatlas (Paris)SP8
WikiGenes221833
SOURCE (Princeton)SP8
Genetics Home Reference (NIH)SP8
Genomic and cartography
GoldenPath hg38 (UCSC)SP8  -     chr7:20782274-20786889 -  7p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SP8  -     7p21.1   [Description]    (hg19-Feb_2009)
EnsemblSP8 - 7p21.1 [CytoView hg19]  SP8 - 7p21.1 [CytoView hg38]
Mapping of homologs : NCBISP8 [Mapview hg19]  SP8 [Mapview hg38]
OMIM608306   
Gene and transcription
Genbank (Entrez)AI632278 AK056857 AK290465 AK299947 AK307969
RefSeq transcript (Entrez)NM_182700 NM_198956
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SP8
Cluster EST : UnigeneHs.195922 [ NCBI ]
CGAP (NCI)Hs.195922
Gene ExpressionSP8 [ NCBI-GEO ]   SP8 [ EBI - ARRAY_EXPRESS ]   SP8 [ SEEK ]   SP8 [ MEM ]
Gene Expression Viewer (FireBrowse)SP8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221833
GTEX Portal (Tissue expression)SP8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXZ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXZ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXZ3
Splice isoforms : SwissVarQ8IXZ3
PhosPhoSitePlusQ8IXZ3
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)SP8
DMDM Disease mutations221833
Blocks (Seattle)SP8
SuperfamilyQ8IXZ3
Peptide AtlasQ8IXZ3
HPRD12208
IPIIPI01010682   IPI00377223   IPI00289549   IPI00908970   IPI00969066   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXZ3
IntAct (EBI)Q8IXZ3
BioGRIDSP8
STRING (EMBL)SP8
ZODIACSP8
Ontologies - Pathways
QuickGOQ8IXZ3
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  dorsal/ventral pattern formation  proximal/distal pattern formation  embryonic limb morphogenesis  metal ion binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  dorsal/ventral pattern formation  proximal/distal pattern formation  embryonic limb morphogenesis  metal ion binding  
NDEx NetworkSP8
Atlas of Cancer Signalling NetworkSP8
Wikipedia pathwaysSP8
Orthology - Evolution
OrthoDB221833
Phylogenetic Trees/Animal Genes : TreeFamSP8
HOVERGENQ8IXZ3
HOGENOMQ8IXZ3
Homologs : HomoloGeneSP8
Homology/Alignments : Family Browser (UCSC)SP8
Gene fusions - Rearrangements
Fusion: Tumor Portal SP8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSP8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SP8
dbVarSP8
ClinVarSP8
1000_GenomesSP8 
Exome Variant ServerSP8
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP221833
Genomic Variants (DGV)SP8 [DGVbeta]
DECIPHERSP8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSP8 
Mutations
ICGC Data PortalSP8 
TCGA Data PortalSP8 
Broad Tumor PortalSP8
OASIS PortalSP8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSP8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSP8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SP8
DgiDB (Drug Gene Interaction Database)SP8
DoCM (Curated mutations)SP8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SP8 (select a term)
intoGenSP8
Cancer3DSP8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608306   
Orphanet
MedgenSP8
Genetic Testing Registry SP8
NextProtQ8IXZ3 [Medical]
TSGene221833
GENETestsSP8
Target ValidationSP8
Huge Navigator SP8 [HugePedia]
snp3D : Map Gene to Disease221833
BioCentury BCIQSP8
ClinGenSP8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221833
Chemical/Pharm GKB GenePA134893390
Clinical trialSP8
Miscellaneous
canSAR (ICR)SP8 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSP8
EVEXSP8
GoPubMedSP8
iHOPSP8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:30:30 CET 2017

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