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SPAAR (small regulatory polypeptide of amino acid response)

Identity

Alias_namesLINC00961
long intergenic non-protein coding RNA 961
Alias_symbol (synonym)SPAR
Other alias
HGNC (Hugo) SPAAR
LocusID (NCBI) 158376
Atlas_Id 79164
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 35909483 and ends at 35911620 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPAAR   27244
Cards
Entrez_Gene (NCBI)SPAAR  158376  small regulatory polypeptide of amino acid response
AliasesLINC00961; SPAR
GeneCards (Weizmann)SPAAR
Ensembl hg19 (Hinxton)ENSG00000235387 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235387 [Gene_View]  chr9:35909483-35911620 [Contig_View]  SPAAR [Vega]
ICGC DataPortalENSG00000235387
TCGA cBioPortalSPAAR
AceView (NCBI)SPAAR
Genatlas (Paris)SPAAR
WikiGenes158376
SOURCE (Princeton)SPAAR
Genetics Home Reference (NIH)SPAAR
Genomic and cartography
GoldenPath hg38 (UCSC)SPAAR  -     chr9:35909483-35911620 +  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPAAR  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblSPAAR - 9p13.3 [CytoView hg19]  SPAAR - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBISPAAR [Mapview hg19]  SPAAR [Mapview hg38]
OMIM617627   
Gene and transcription
Genbank (Entrez)AK056723 BC034765 BC113682 BC113684
RefSeq transcript (Entrez)NM_001348107
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPAAR
Cluster EST : UnigeneHs.302677 [ NCBI ]
CGAP (NCI)Hs.302677
Alternative Splicing GalleryENSG00000235387
Gene ExpressionSPAAR [ NCBI-GEO ]   SPAAR [ EBI - ARRAY_EXPRESS ]   SPAAR [ SEEK ]   SPAAR [ MEM ]
Gene Expression Viewer (FireBrowse)SPAAR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)158376
GTEX Portal (Tissue expression)SPAAR
Human Protein AtlasENSG00000235387-SPAAR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPAAR
DMDM Disease mutations158376
Blocks (Seattle)SPAAR
Human Protein Atlas [tissue]ENSG00000235387-SPAAR [tissue]
Protein Interaction databases
FunCoupENSG00000235387
BioGRIDSPAAR
STRING (EMBL)SPAAR
ZODIACSPAAR
Ontologies - Pathways
Huge Navigator SPAAR [HugePedia]
snp3D : Map Gene to Disease158376
BioCentury BCIQSPAAR
ClinGenSPAAR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158376
Clinical trialSPAAR
Miscellaneous
canSAR (ICR)SPAAR (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPAAR
EVEXSPAAR
GoPubMedSPAAR
iHOPSPAAR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:20:45 CET 2017

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