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SPACA1 (sperm acrosome associated 1)

Identity

Alias_symbol (synonym)SAMP32
Other alias
HGNC (Hugo) SPACA1
LocusID (NCBI) 81833
Atlas_Id 74093
Location 6q15  [Link to chromosome band 6q15]
Location_base_pair Starts at 88047789 and ends at 88066832 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPACA1   14967
Cards
Entrez_Gene (NCBI)SPACA1  81833  sperm acrosome associated 1
AliasesSAMP32
GeneCards (Weizmann)SPACA1
Ensembl hg19 (Hinxton)ENSG00000118434 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118434 [Gene_View]  ENSG00000118434 [Sequence]  chr6:88047789-88066832 [Contig_View]  SPACA1 [Vega]
ICGC DataPortalENSG00000118434
TCGA cBioPortalSPACA1
AceView (NCBI)SPACA1
Genatlas (Paris)SPACA1
WikiGenes81833
SOURCE (Princeton)SPACA1
Genetics Home Reference (NIH)SPACA1
Genomic and cartography
GoldenPath hg38 (UCSC)SPACA1  -     chr6:88047789-88066832 +  6q15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPACA1  -     6q15   [Description]    (hg19-Feb_2009)
EnsemblSPACA1 - 6q15 [CytoView hg19]  SPACA1 - 6q15 [CytoView hg38]
Mapping of homologs : NCBISPACA1 [Mapview hg19]  SPACA1 [Mapview hg38]
OMIM612739   
Gene and transcription
Genbank (Entrez)AF203447 BC029488
RefSeq transcript (Entrez)NM_030960
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPACA1
Cluster EST : UnigeneHs.161241 [ NCBI ]
CGAP (NCI)Hs.161241
Alternative Splicing GalleryENSG00000118434
Gene ExpressionSPACA1 [ NCBI-GEO ]   SPACA1 [ EBI - ARRAY_EXPRESS ]   SPACA1 [ SEEK ]   SPACA1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPACA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81833
GTEX Portal (Tissue expression)SPACA1
Human Protein AtlasENSG00000118434-SPACA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBV2
Splice isoforms : SwissVarQ9HBV2
PhosPhoSitePlusQ9HBV2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPACA1
DMDM Disease mutations81833
Blocks (Seattle)SPACA1
SuperfamilyQ9HBV2
Human Protein Atlas [tissue]ENSG00000118434-SPACA1 [tissue]
Peptide AtlasQ9HBV2
HPRD15419
IPIIPI00008910   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBV2
IntAct (EBI)Q9HBV2
FunCoupENSG00000118434
BioGRIDSPACA1
STRING (EMBL)SPACA1
ZODIACSPACA1
Ontologies - Pathways
QuickGOQ9HBV2
Ontology : AmiGOacrosome assembly  acrosomal membrane  integral component of membrane  
Ontology : EGO-EBIacrosome assembly  acrosomal membrane  integral component of membrane  
NDEx NetworkSPACA1
Atlas of Cancer Signalling NetworkSPACA1
Wikipedia pathwaysSPACA1
Orthology - Evolution
OrthoDB81833
GeneTree (enSembl)ENSG00000118434
Phylogenetic Trees/Animal Genes : TreeFamSPACA1
HOVERGENQ9HBV2
HOGENOMQ9HBV2
Homologs : HomoloGeneSPACA1
Homology/Alignments : Family Browser (UCSC)SPACA1
Gene fusions - Rearrangements
Fusion : QuiverSPACA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPACA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPACA1
dbVarSPACA1
ClinVarSPACA1
1000_GenomesSPACA1 
Exome Variant ServerSPACA1
ExAC (Exome Aggregation Consortium)ENSG00000118434
GNOMAD BrowserENSG00000118434
Varsome BrowserSPACA1
Genetic variants : HAPMAP81833
Genomic Variants (DGV)SPACA1 [DGVbeta]
DECIPHERSPACA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPACA1 
Mutations
ICGC Data PortalSPACA1 
TCGA Data PortalSPACA1 
Broad Tumor PortalSPACA1
OASIS PortalSPACA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPACA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPACA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPACA1
DgiDB (Drug Gene Interaction Database)SPACA1
DoCM (Curated mutations)SPACA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPACA1 (select a term)
intoGenSPACA1
Cancer3DSPACA1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612739   
Orphanet
DisGeNETSPACA1
MedgenSPACA1
Genetic Testing Registry SPACA1
NextProtQ9HBV2 [Medical]
TSGene81833
GENETestsSPACA1
Target ValidationSPACA1
Huge Navigator SPACA1 [HugePedia]
snp3D : Map Gene to Disease81833
BioCentury BCIQSPACA1
ClinGenSPACA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81833
Chemical/Pharm GKB GenePA37943
Clinical trialSPACA1
Miscellaneous
canSAR (ICR)SPACA1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPACA1
EVEXSPACA1
GoPubMedSPACA1
iHOPSPACA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:32:40 CEST 2018

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