Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SPACA4 (sperm acrosome associated 4)

Identity

Alias_symbol (synonym)SAMP14
Other alias
HGNC (Hugo) SPACA4
LocusID (NCBI) 171169
Atlas_Id 74094
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49110000 and ends at 49110971 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPACA4   16441
Cards
Entrez_Gene (NCBI)SPACA4  171169  sperm acrosome associated 4
AliasesSAMP14
GeneCards (Weizmann)SPACA4
Ensembl hg19 (Hinxton)ENSG00000177202 [Gene_View]  chr19:49110000-49110971 [Contig_View]  SPACA4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000177202 [Gene_View]  chr19:49110000-49110971 [Contig_View]  SPACA4 [Vega]
ICGC DataPortalENSG00000177202
TCGA cBioPortalSPACA4
AceView (NCBI)SPACA4
Genatlas (Paris)SPACA4
WikiGenes171169
SOURCE (Princeton)SPACA4
Genetics Home Reference (NIH)SPACA4
Genomic and cartography
GoldenPath hg19 (UCSC)SPACA4  -     chr19:49110000-49110971 +  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPACA4  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblSPACA4 - 19q13.33 [CytoView hg19]  SPACA4 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBISPACA4 [Mapview hg19]  SPACA4 [Mapview hg38]
OMIM609932   
Gene and transcription
Genbank (Entrez)AF353721 AY358387 BC047334
RefSeq transcript (Entrez)NM_133498
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)SPACA4
Cluster EST : UnigeneHs.122599 [ NCBI ]
CGAP (NCI)Hs.122599
Alternative Splicing GalleryENSG00000177202
Gene ExpressionSPACA4 [ NCBI-GEO ]   SPACA4 [ EBI - ARRAY_EXPRESS ]   SPACA4 [ SEEK ]   SPACA4 [ MEM ]
Gene Expression Viewer (FireBrowse)SPACA4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)171169
GTEX Portal (Tissue expression)SPACA4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDM5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDM5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDM5
Splice isoforms : SwissVarQ8TDM5
PhosPhoSitePlusQ8TDM5
Domains : Interpro (EBI)LY6_UPAR   
Domain families : Pfam (Sanger)UPAR_LY6 (PF00021)   
Domain families : Pfam (NCBI)pfam00021   
Conserved Domain (NCBI)SPACA4
DMDM Disease mutations171169
Blocks (Seattle)SPACA4
SuperfamilyQ8TDM5
Human Protein AtlasENSG00000177202
Peptide AtlasQ8TDM5
HPRD15421
IPIIPI00152561   
Protein Interaction databases
DIP (DOE-UCLA)Q8TDM5
IntAct (EBI)Q8TDM5
FunCoupENSG00000177202
BioGRIDSPACA4
STRING (EMBL)SPACA4
ZODIACSPACA4
Ontologies - Pathways
QuickGOQ8TDM5
Ontology : AmiGOacrosomal vesicle  plasma membrane  cell adhesion  anchored component of membrane  
Ontology : EGO-EBIacrosomal vesicle  plasma membrane  cell adhesion  anchored component of membrane  
NDEx NetworkSPACA4
Atlas of Cancer Signalling NetworkSPACA4
Wikipedia pathwaysSPACA4
Orthology - Evolution
OrthoDB171169
GeneTree (enSembl)ENSG00000177202
Phylogenetic Trees/Animal Genes : TreeFamSPACA4
HOVERGENQ8TDM5
HOGENOMQ8TDM5
Homologs : HomoloGeneSPACA4
Homology/Alignments : Family Browser (UCSC)SPACA4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPACA4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPACA4
dbVarSPACA4
ClinVarSPACA4
1000_GenomesSPACA4 
Exome Variant ServerSPACA4
ExAC (Exome Aggregation Consortium)SPACA4 (select the gene name)
Genetic variants : HAPMAP171169
Genomic Variants (DGV)SPACA4 [DGVbeta]
DECIPHER (Syndromes)19:49110000-49110971  ENSG00000177202
CONAN: Copy Number AnalysisSPACA4 
Mutations
ICGC Data PortalSPACA4 
TCGA Data PortalSPACA4 
Broad Tumor PortalSPACA4
OASIS PortalSPACA4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPACA4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPACA4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPACA4
DgiDB (Drug Gene Interaction Database)SPACA4
DoCM (Curated mutations)SPACA4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPACA4 (select a term)
intoGenSPACA4
Cancer3DSPACA4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609932   
Orphanet
MedgenSPACA4
Genetic Testing Registry SPACA4
NextProtQ8TDM5 [Medical]
TSGene171169
GENETestsSPACA4
Huge Navigator SPACA4 [HugePedia]
snp3D : Map Gene to Disease171169
BioCentury BCIQSPACA4
ClinGenSPACA4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD171169
Chemical/Pharm GKB GenePA38141
Clinical trialSPACA4
Miscellaneous
canSAR (ICR)SPACA4 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPACA4
EVEXSPACA4
GoPubMedSPACA4
iHOPSPACA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:46:13 CET 2017

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