Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SPACA5 (sperm acrosome associated 5)

Identity

Alias_symbol (synonym)SLLP2
LYZL5
LYC5
UNQ6288
dJ54B20.3
PNPK6288
Other aliasSLLP-X
HGNC (Hugo) SPACA5
LocusID (NCBI) 389852
Atlas_Id 74095
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 48004336 and ends at 48009729 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPACA5   31353
Cards
Entrez_Gene (NCBI)SPACA5  389852  sperm acrosome associated 5
AliasesLYC5; LYZL5; PNPK6288; SLLP-X; 
SLLP2; UNQ6288
GeneCards (Weizmann)SPACA5
Ensembl hg19 (Hinxton)ENSG00000171489 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171489 [Gene_View]  chrX:48004336-48009729 [Contig_View]  SPACA5 [Vega]
ICGC DataPortalENSG00000171489
TCGA cBioPortalSPACA5
AceView (NCBI)SPACA5
Genatlas (Paris)SPACA5
WikiGenes389852
SOURCE (Princeton)SPACA5
Genetics Home Reference (NIH)SPACA5
Genomic and cartography
GoldenPath hg38 (UCSC)SPACA5  -     chrX:48004336-48009729 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPACA5  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblSPACA5 - Xp11.23 [CytoView hg19]  SPACA5 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBISPACA5 [Mapview hg19]  SPACA5 [Mapview hg38]
OMIM300593   
Gene and transcription
Genbank (Entrez)AF217622 AY358844 BX279755 HM005426
RefSeq transcript (Entrez)NM_205856
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPACA5
Cluster EST : UnigeneHs.712503 [ NCBI ]
CGAP (NCI)Hs.712503
Alternative Splicing GalleryENSG00000171489
Gene ExpressionSPACA5 [ NCBI-GEO ]   SPACA5 [ EBI - ARRAY_EXPRESS ]   SPACA5 [ SEEK ]   SPACA5 [ MEM ]
Gene Expression Viewer (FireBrowse)SPACA5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389852
GTEX Portal (Tissue expression)SPACA5
Human Protein AtlasENSG00000171489-SPACA5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QH8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QH8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QH8
Splice isoforms : SwissVarQ96QH8
Catalytic activity : Enzyme3.2.1.17 [ Enzyme-Expasy ]   3.2.1.173.2.1.17 [ IntEnz-EBI ]   3.2.1.17 [ BRENDA ]   3.2.1.17 [ KEGG ]   
PhosPhoSitePlusQ96QH8
Domaine pattern : Prosite (Expaxy)LACTALBUMIN_LYSOZYME_2 (PS51348)   
Domains : Interpro (EBI)Glyco_hydro_22    Glyco_hydro_22_lys    Lysozyme-like_dom    LYZL5   
Domain families : Pfam (Sanger)Lys (PF00062)   
Domain families : Pfam (NCBI)pfam00062   
Domain families : Smart (EMBL)LYZ1 (SM00263)  
Conserved Domain (NCBI)SPACA5
DMDM Disease mutations389852
Blocks (Seattle)SPACA5
SuperfamilyQ96QH8
Human Protein Atlas [tissue]ENSG00000171489-SPACA5 [tissue]
Peptide AtlasQ96QH8
HPRD10159
IPIIPI00044895   
Protein Interaction databases
DIP (DOE-UCLA)Q96QH8
IntAct (EBI)Q96QH8
FunCoupENSG00000171489
BioGRIDSPACA5
STRING (EMBL)SPACA5
ZODIACSPACA5
Ontologies - Pathways
QuickGOQ96QH8
Ontology : AmiGOlysozyme activity  extracellular region  metabolic process  
Ontology : EGO-EBIlysozyme activity  extracellular region  metabolic process  
NDEx NetworkSPACA5
Atlas of Cancer Signalling NetworkSPACA5
Wikipedia pathwaysSPACA5
Orthology - Evolution
OrthoDB389852
GeneTree (enSembl)ENSG00000171489
Phylogenetic Trees/Animal Genes : TreeFamSPACA5
HOVERGENQ96QH8
HOGENOMQ96QH8
Homologs : HomoloGeneSPACA5
Homology/Alignments : Family Browser (UCSC)SPACA5
Gene fusions - Rearrangements
Tumor Fusion PortalSPACA5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPACA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPACA5
dbVarSPACA5
ClinVarSPACA5
1000_GenomesSPACA5 
Exome Variant ServerSPACA5
ExAC (Exome Aggregation Consortium)ENSG00000171489
GNOMAD BrowserENSG00000171489
Genetic variants : HAPMAP389852
Genomic Variants (DGV)SPACA5 [DGVbeta]
DECIPHERSPACA5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPACA5 
Mutations
ICGC Data PortalSPACA5 
TCGA Data PortalSPACA5 
Broad Tumor PortalSPACA5
OASIS PortalSPACA5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPACA5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPACA5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPACA5
DgiDB (Drug Gene Interaction Database)SPACA5
DoCM (Curated mutations)SPACA5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPACA5 (select a term)
intoGenSPACA5
Cancer3DSPACA5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300593   
Orphanet
DisGeNETSPACA5
MedgenSPACA5
Genetic Testing Registry SPACA5
NextProtQ96QH8 [Medical]
TSGene389852
GENETestsSPACA5
Target ValidationSPACA5
Huge Navigator SPACA5 [HugePedia]
snp3D : Map Gene to Disease389852
BioCentury BCIQSPACA5
ClinGenSPACA5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389852
Chemical/Pharm GKB GenePA134907501
Clinical trialSPACA5
Miscellaneous
canSAR (ICR)SPACA5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPACA5
EVEXSPACA5
GoPubMedSPACA5
iHOPSPACA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:00:41 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.