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SPACA5B (sperm acrosome associated 5B)

Identity

Alias_symbol (synonym)LYZL5B
Other alias-
HGNC (Hugo) SPACA5B
LocusID (NCBI) 729201
Atlas_Id 74096
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 47867170 and ends at 47869126 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPACA5B   19142
Cards
Entrez_Gene (NCBI)SPACA5B  729201  sperm acrosome associated 5B
Aliases
GeneCards (Weizmann)SPACA5B
Ensembl hg19 (Hinxton)ENSG00000171478 [Gene_View]  chrX:47867170-47869126 [Contig_View]  SPACA5B [Vega]
Ensembl hg38 (Hinxton)ENSG00000171478 [Gene_View]  chrX:47867170-47869126 [Contig_View]  SPACA5B [Vega]
ICGC DataPortalENSG00000171478
TCGA cBioPortalSPACA5B
AceView (NCBI)SPACA5B
Genatlas (Paris)SPACA5B
WikiGenes729201
SOURCE (Princeton)SPACA5B
Genetics Home Reference (NIH)SPACA5B
Genomic and cartography
GoldenPath hg19 (UCSC)SPACA5B  -     chrX:47867170-47869126 +  Xp11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPACA5B  -     Xp11.23   [Description]    (hg38-Dec_2013)
EnsemblSPACA5B - Xp11.23 [CytoView hg19]  SPACA5B - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBISPACA5B [Mapview hg19]  SPACA5B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF217622 AY358844
RefSeq transcript (Entrez)NM_001079900
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_079573 NW_004929439
Consensus coding sequences : CCDS (NCBI)SPACA5B
Cluster EST : UnigeneHs.712503 [ NCBI ]
CGAP (NCI)Hs.712503
Alternative Splicing GalleryENSG00000171478
Gene ExpressionSPACA5B [ NCBI-GEO ]   SPACA5B [ EBI - ARRAY_EXPRESS ]   SPACA5B [ SEEK ]   SPACA5B [ MEM ]
Gene Expression Viewer (FireBrowse)SPACA5B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729201
GTEX Portal (Tissue expression)SPACA5B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QH8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QH8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QH8
Splice isoforms : SwissVarQ96QH8
Catalytic activity : Enzyme3.2.1.17 [ Enzyme-Expasy ]   3.2.1.173.2.1.17 [ IntEnz-EBI ]   3.2.1.17 [ BRENDA ]   3.2.1.17 [ KEGG ]   
PhosPhoSitePlusQ96QH8
Domaine pattern : Prosite (Expaxy)LACTALBUMIN_LYSOZYME_2 (PS51348)   
Domains : Interpro (EBI)Glyco_hydro_22    Glyco_hydro_22_lys    Lysozyme-like_dom    LYZL5   
Domain families : Pfam (Sanger)Lys (PF00062)   
Domain families : Pfam (NCBI)pfam00062   
Domain families : Smart (EMBL)LYZ1 (SM00263)  
Conserved Domain (NCBI)SPACA5B
DMDM Disease mutations729201
Blocks (Seattle)SPACA5B
SuperfamilyQ96QH8
Human Protein AtlasENSG00000171478
Peptide AtlasQ96QH8
Protein Interaction databases
DIP (DOE-UCLA)Q96QH8
IntAct (EBI)Q96QH8
FunCoupENSG00000171478
BioGRIDSPACA5B
STRING (EMBL)SPACA5B
ZODIACSPACA5B
Ontologies - Pathways
QuickGOQ96QH8
Ontology : AmiGOlysozyme activity  extracellular region  metabolic process  
Ontology : EGO-EBIlysozyme activity  extracellular region  metabolic process  
NDEx NetworkSPACA5B
Atlas of Cancer Signalling NetworkSPACA5B
Wikipedia pathwaysSPACA5B
Orthology - Evolution
OrthoDB729201
GeneTree (enSembl)ENSG00000171478
Phylogenetic Trees/Animal Genes : TreeFamSPACA5B
HOVERGENQ96QH8
HOGENOMQ96QH8
Homologs : HomoloGeneSPACA5B
Homology/Alignments : Family Browser (UCSC)SPACA5B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPACA5B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPACA5B
dbVarSPACA5B
ClinVarSPACA5B
1000_GenomesSPACA5B 
Exome Variant ServerSPACA5B
ExAC (Exome Aggregation Consortium)SPACA5B (select the gene name)
Genetic variants : HAPMAP729201
Genomic Variants (DGV)SPACA5B [DGVbeta]
DECIPHER (Syndromes)X:47867170-47869126  ENSG00000171478
CONAN: Copy Number AnalysisSPACA5B 
Mutations
ICGC Data PortalSPACA5B 
TCGA Data PortalSPACA5B 
Broad Tumor PortalSPACA5B
OASIS PortalSPACA5B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPACA5B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPACA5B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPACA5B
DgiDB (Drug Gene Interaction Database)SPACA5B
DoCM (Curated mutations)SPACA5B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPACA5B (select a term)
intoGenSPACA5B
Cancer3DSPACA5B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPACA5B
Genetic Testing Registry SPACA5B
NextProtQ96QH8 [Medical]
TSGene729201
GENETestsSPACA5B
Huge Navigator SPACA5B [HugePedia]
snp3D : Map Gene to Disease729201
BioCentury BCIQSPACA5B
ClinGenSPACA5B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729201
Chemical/Pharm GKB GenePA162404365
Clinical trialSPACA5B
Miscellaneous
canSAR (ICR)SPACA5B (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPACA5B
EVEXSPACA5B
GoPubMedSPACA5B
iHOPSPACA5B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:14 CET 2017

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