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SPACA6 (sperm acrosome associated 6)

Identity

Alias_namesNCRNA00085
LINC00085
SPACA6P
non-protein coding RNA 85
long intergenic non-protein coding RNA 85
sperm acrosome associated 6, pseudogene
Alias_symbol (synonym)LET7EH
Other alias
HGNC (Hugo) SPACA6
LocusID (NCBI) 147650
Atlas_Id 55961
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 51693344 and ends at 51705190 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SPACA6 (19q13.41) / SEMA5B (3q21.1)SPACA6 (19q13.41) / SRGN (10q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPACA6   27113
Cards
Entrez_Gene (NCBI)SPACA6  147650  sperm acrosome associated 6
AliasesLET7EH; LINC00085; NCRNA00085; SPACA6P
GeneCards (Weizmann)SPACA6
Ensembl hg19 (Hinxton)ENSG00000182310 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182310 [Gene_View]  chr19:51693344-51705190 [Contig_View]  SPACA6 [Vega]
ICGC DataPortalENSG00000182310
TCGA cBioPortalSPACA6
AceView (NCBI)SPACA6
Genatlas (Paris)SPACA6
WikiGenes147650
SOURCE (Princeton)SPACA6
Genetics Home Reference (NIH)SPACA6
Genomic and cartography
GoldenPath hg38 (UCSC)SPACA6  -     chr19:51693344-51705190 +  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPACA6  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblSPACA6 - 19q13.41 [CytoView hg19]  SPACA6 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBISPACA6 [Mapview hg19]  SPACA6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024362 AY358799 BC041134 BC104208 BC104209
RefSeq transcript (Entrez)NM_001316972 NM_001316994 NM_207324
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPACA6
Cluster EST : UnigeneHs.467174 [ NCBI ]
CGAP (NCI)Hs.467174
Alternative Splicing GalleryENSG00000182310
Gene ExpressionSPACA6 [ NCBI-GEO ]   SPACA6 [ EBI - ARRAY_EXPRESS ]   SPACA6 [ SEEK ]   SPACA6 [ MEM ]
Gene Expression Viewer (FireBrowse)SPACA6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147650
GTEX Portal (Tissue expression)SPACA6
Protein : pattern, domain, 3D structure
UniProt/SwissProtW5XKT8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtW5XKT8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProW5XKT8
Splice isoforms : SwissVarW5XKT8
PhosPhoSitePlusW5XKT8
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPACA6
DMDM Disease mutations147650
Blocks (Seattle)SPACA6
SuperfamilyW5XKT8
Human Protein AtlasENSG00000182310
Peptide AtlasW5XKT8
HPRD17301
IPIIPI00883816   IPI00929699   
Protein Interaction databases
DIP (DOE-UCLA)W5XKT8
IntAct (EBI)W5XKT8
FunCoupENSG00000182310
BioGRIDSPACA6
STRING (EMBL)SPACA6
ZODIACSPACA6
Ontologies - Pathways
QuickGOW5XKT8
Ontology : AmiGOprotein binding  fusion of sperm to egg plasma membrane  integral component of membrane  
Ontology : EGO-EBIprotein binding  fusion of sperm to egg plasma membrane  integral component of membrane  
NDEx NetworkSPACA6
Atlas of Cancer Signalling NetworkSPACA6
Wikipedia pathwaysSPACA6
Orthology - Evolution
OrthoDB147650
GeneTree (enSembl)ENSG00000182310
Phylogenetic Trees/Animal Genes : TreeFamSPACA6
HOVERGENW5XKT8
HOGENOMW5XKT8
Homologs : HomoloGeneSPACA6
Homology/Alignments : Family Browser (UCSC)SPACA6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPACA6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPACA6
dbVarSPACA6
ClinVarSPACA6
1000_GenomesSPACA6 
Exome Variant ServerSPACA6
ExAC (Exome Aggregation Consortium)SPACA6 (select the gene name)
Genetic variants : HAPMAP147650
Genomic Variants (DGV)SPACA6 [DGVbeta]
DECIPHERSPACA6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPACA6 
Mutations
ICGC Data PortalSPACA6 
TCGA Data PortalSPACA6 
Broad Tumor PortalSPACA6
OASIS PortalSPACA6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPACA6
BioMutasearch SPACA6
DgiDB (Drug Gene Interaction Database)SPACA6
DoCM (Curated mutations)SPACA6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPACA6 (select a term)
intoGenSPACA6
Cancer3DSPACA6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPACA6
Genetic Testing Registry SPACA6
NextProtW5XKT8 [Medical]
TSGene147650
GENETestsSPACA6
Target ValidationSPACA6
Huge Navigator SPACA6 [HugePedia]
snp3D : Map Gene to Disease147650
BioCentury BCIQSPACA6
ClinGenSPACA6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147650
Chemical/Pharm GKB GenePA164723593
Clinical trialSPACA6
Miscellaneous
canSAR (ICR)SPACA6 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPACA6
EVEXSPACA6
GoPubMedSPACA6
iHOPSPACA6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:32:35 CEST 2017

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