Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SPACA6P (sperm acrosome associated 6, pseudogene)

Identity

Other aliasLET7EH
LINC00085
NCRNA00085
SPACA6
HGNC (Hugo) SPACA6P
LocusID (NCBI) 147650
Atlas_Id 74097
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 52206207 and ends at 52208442 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPACA6P   27113
Cards
Entrez_Gene (NCBI)SPACA6P  147650  sperm acrosome associated 6, pseudogene
AliasesLET7EH; LINC00085; NCRNA00085; SPACA6
GeneCards (Weizmann)SPACA6P
Ensembl hg19 (Hinxton)ENSG00000182310 [Gene_View]  chr19:52206207-52208442 [Contig_View]  SPACA6P [Vega]
Ensembl hg38 (Hinxton)ENSG00000182310 [Gene_View]  chr19:52206207-52208442 [Contig_View]  SPACA6P [Vega]
ICGC DataPortalENSG00000182310
TCGA cBioPortalSPACA6P
AceView (NCBI)SPACA6P
Genatlas (Paris)SPACA6P
WikiGenes147650
SOURCE (Princeton)SPACA6P
Genetics Home Reference (NIH)SPACA6P
Genomic and cartography
GoldenPath hg19 (UCSC)SPACA6P  -     chr19:52206207-52208442 +  19q13.41   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPACA6P  -     19q13.41   [Description]    (hg38-Dec_2013)
EnsemblSPACA6P - 19q13.41 [CytoView hg19]  SPACA6P - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBISPACA6P [Mapview hg19]  SPACA6P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024362 AY358799 BC041134 BC104208 BC104209
RefSeq transcript (Entrez)NM_207324
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)SPACA6P
Cluster EST : UnigeneHs.467174 [ NCBI ]
CGAP (NCI)Hs.467174
Alternative Splicing GalleryENSG00000182310
Gene ExpressionSPACA6P [ NCBI-GEO ]   SPACA6P [ EBI - ARRAY_EXPRESS ]   SPACA6P [ SEEK ]   SPACA6P [ MEM ]
Gene Expression Viewer (FireBrowse)SPACA6P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)147650
GTEX Portal (Tissue expression)SPACA6P
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPACA6P
DMDM Disease mutations147650
Blocks (Seattle)SPACA6P
Human Protein AtlasENSG00000182310
HPRD17301
IPIIPI00883816   IPI00929699   
Protein Interaction databases
FunCoupENSG00000182310
BioGRIDSPACA6P
STRING (EMBL)SPACA6P
ZODIACSPACA6P
Ontologies - Pathways
Huge Navigator SPACA6P [HugePedia]
snp3D : Map Gene to Disease147650
BioCentury BCIQSPACA6P
ClinGenSPACA6P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147650
Chemical/Pharm GKB GenePA164723593
Clinical trialSPACA6P
Miscellaneous
canSAR (ICR)SPACA6P (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPACA6P
EVEXSPACA6P
GoPubMedSPACA6P
iHOPSPACA6P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:14 CET 2017

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