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SPACA7 (sperm acrosome associated 7)

Identity

Alias_namesC13orf28
chromosome 13 open reading frame 28
Other alias
HGNC (Hugo) SPACA7
LocusID (NCBI) 122258
Atlas_Id 74099
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 113030651 and ends at 113089009 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CRYL1 (13q12.11) / SPACA7 (13q34)DOCK9 (13q32.3) / SPACA7 (13q34)CRYL1 SPACA7
DOCK9 SPACA7

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPACA7   29575
Cards
Entrez_Gene (NCBI)SPACA7  122258  sperm acrosome associated 7
AliasesC13orf28
GeneCards (Weizmann)SPACA7
Ensembl hg19 (Hinxton)ENSG00000153498 [Gene_View]  chr13:113030651-113089009 [Contig_View]  SPACA7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000153498 [Gene_View]  chr13:113030651-113089009 [Contig_View]  SPACA7 [Vega]
ICGC DataPortalENSG00000153498
TCGA cBioPortalSPACA7
AceView (NCBI)SPACA7
Genatlas (Paris)SPACA7
WikiGenes122258
SOURCE (Princeton)SPACA7
Genetics Home Reference (NIH)SPACA7
Genomic and cartography
GoldenPath hg19 (UCSC)SPACA7  -     chr13:113030651-113089009 +  13q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPACA7  -     13q34   [Description]    (hg38-Dec_2013)
EnsemblSPACA7 - 13q34 [CytoView hg19]  SPACA7 - 13q34 [CytoView hg38]
Mapping of homologs : NCBISPACA7 [Mapview hg19]  SPACA7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI219896 AK130866 BC016750
RefSeq transcript (Entrez)NM_145248
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_027140 NT_187592 NW_004929390
Consensus coding sequences : CCDS (NCBI)SPACA7
Cluster EST : UnigeneHs.97592 [ NCBI ]
CGAP (NCI)Hs.97592
Alternative Splicing GalleryENSG00000153498
Gene ExpressionSPACA7 [ NCBI-GEO ]   SPACA7 [ EBI - ARRAY_EXPRESS ]   SPACA7 [ SEEK ]   SPACA7 [ MEM ]
Gene Expression Viewer (FireBrowse)SPACA7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)122258
GTEX Portal (Tissue expression)SPACA7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KW9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KW9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KW9
Splice isoforms : SwissVarQ96KW9
PhosPhoSitePlusQ96KW9
Domains : Interpro (EBI)SPACA7   
Domain families : Pfam (Sanger)SPACA7 (PF15307)   
Domain families : Pfam (NCBI)pfam15307   
Conserved Domain (NCBI)SPACA7
DMDM Disease mutations122258
Blocks (Seattle)SPACA7
SuperfamilyQ96KW9
Human Protein AtlasENSG00000153498
Peptide AtlasQ96KW9
HPRD14022
IPIIPI00514960   IPI00514429   IPI00747019   IPI01010904   
Protein Interaction databases
DIP (DOE-UCLA)Q96KW9
IntAct (EBI)Q96KW9
FunCoupENSG00000153498
BioGRIDSPACA7
STRING (EMBL)SPACA7
ZODIACSPACA7
Ontologies - Pathways
QuickGOQ96KW9
Ontology : AmiGOacrosomal vesicle  extracellular region  
Ontology : EGO-EBIacrosomal vesicle  extracellular region  
NDEx NetworkSPACA7
Atlas of Cancer Signalling NetworkSPACA7
Wikipedia pathwaysSPACA7
Orthology - Evolution
OrthoDB122258
GeneTree (enSembl)ENSG00000153498
Phylogenetic Trees/Animal Genes : TreeFamSPACA7
HOVERGENQ96KW9
HOGENOMQ96KW9
Homologs : HomoloGeneSPACA7
Homology/Alignments : Family Browser (UCSC)SPACA7
Gene fusions - Rearrangements
Fusion: TCGACRYL1 SPACA7
Fusion: TCGADOCK9 SPACA7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPACA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPACA7
dbVarSPACA7
ClinVarSPACA7
1000_GenomesSPACA7 
Exome Variant ServerSPACA7
ExAC (Exome Aggregation Consortium)SPACA7 (select the gene name)
Genetic variants : HAPMAP122258
Genomic Variants (DGV)SPACA7 [DGVbeta]
DECIPHER (Syndromes)13:113030651-113089009  ENSG00000153498
CONAN: Copy Number AnalysisSPACA7 
Mutations
ICGC Data PortalSPACA7 
TCGA Data PortalSPACA7 
Broad Tumor PortalSPACA7
OASIS PortalSPACA7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPACA7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPACA7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPACA7
DgiDB (Drug Gene Interaction Database)SPACA7
DoCM (Curated mutations)SPACA7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPACA7 (select a term)
intoGenSPACA7
Cancer3DSPACA7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPACA7
Genetic Testing Registry SPACA7
NextProtQ96KW9 [Medical]
TSGene122258
GENETestsSPACA7
Huge Navigator SPACA7 [HugePedia]
snp3D : Map Gene to Disease122258
BioCentury BCIQSPACA7
ClinGenSPACA7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD122258
Chemical/Pharm GKB GenePA147358486
Clinical trialSPACA7
Miscellaneous
canSAR (ICR)SPACA7 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPACA7
EVEXSPACA7
GoPubMedSPACA7
iHOPSPACA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:14 CET 2017

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