Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SPACA9 (sperm acrosome associated 9)

Identity

Other aliasC9orf9
Mast
HGNC (Hugo) SPACA9
LocusID (NCBI) 11092
Atlas_Id 78772
Location 9q34.13  [Link to chromosome band 9q34]
Location_base_pair Starts at 132878891 and ends at 132890032 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPACA9   1367
Cards
Entrez_Gene (NCBI)SPACA9  11092  sperm acrosome associated 9
AliasesC9orf9; Mast
GeneCards (Weizmann)SPACA9
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:132878891-132890032 [Contig_View]  SPACA9 [Vega]
TCGA cBioPortalSPACA9
AceView (NCBI)SPACA9
Genatlas (Paris)SPACA9
WikiGenes11092
SOURCE (Princeton)SPACA9
Genetics Home Reference (NIH)SPACA9
Genomic and cartography
GoldenPath hg38 (UCSC)SPACA9  -     chr9:132878891-132890032 +  9q34.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPACA9  -     9q34.13   [Description]    (hg19-Feb_2009)
EnsemblSPACA9 - 9q34.13 [CytoView hg19]  SPACA9 - 9q34.13 [CytoView hg38]
Mapping of homologs : NCBISPACA9 [Mapview hg19]  SPACA9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ011375 AK075259 AK130389 BC012940 CK906174
RefSeq transcript (Entrez)NM_001316897 NM_001316898 NM_001316900 NM_018956
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPACA9
Cluster EST : UnigeneHs.62595 [ NCBI ]
CGAP (NCI)Hs.62595
Gene ExpressionSPACA9 [ NCBI-GEO ]   SPACA9 [ EBI - ARRAY_EXPRESS ]   SPACA9 [ SEEK ]   SPACA9 [ MEM ]
Gene Expression Viewer (FireBrowse)SPACA9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11092
GTEX Portal (Tissue expression)SPACA9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96E40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96E40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96E40
Splice isoforms : SwissVarQ96E40
PhosPhoSitePlusQ96E40
Domains : Interpro (EBI)SPACA9   
Domain families : Pfam (Sanger)DUF4561 (PF15120)   
Domain families : Pfam (NCBI)pfam15120   
Conserved Domain (NCBI)SPACA9
DMDM Disease mutations11092
Blocks (Seattle)SPACA9
SuperfamilyQ96E40
Peptide AtlasQ96E40
HPRD12986
IPIIPI00101171   IPI00395817   IPI00442585   
Protein Interaction databases
DIP (DOE-UCLA)Q96E40
IntAct (EBI)Q96E40
BioGRIDSPACA9
STRING (EMBL)SPACA9
ZODIACSPACA9
Ontologies - Pathways
QuickGOQ96E40
Ontology : AmiGOacrosomal vesicle  protein binding  cytoplasmic microtubule  calcium-dependent protein binding  
Ontology : EGO-EBIacrosomal vesicle  protein binding  cytoplasmic microtubule  calcium-dependent protein binding  
NDEx NetworkSPACA9
Atlas of Cancer Signalling NetworkSPACA9
Wikipedia pathwaysSPACA9
Orthology - Evolution
OrthoDB11092
Phylogenetic Trees/Animal Genes : TreeFamSPACA9
HOVERGENQ96E40
HOGENOMQ96E40
Homologs : HomoloGeneSPACA9
Homology/Alignments : Family Browser (UCSC)SPACA9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPACA9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPACA9
dbVarSPACA9
ClinVarSPACA9
1000_GenomesSPACA9 
Exome Variant ServerSPACA9
ExAC (Exome Aggregation Consortium)SPACA9 (select the gene name)
Genetic variants : HAPMAP11092
Genomic Variants (DGV)SPACA9 [DGVbeta]
DECIPHERSPACA9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPACA9 
Mutations
ICGC Data PortalSPACA9 
TCGA Data PortalSPACA9 
Broad Tumor PortalSPACA9
OASIS PortalSPACA9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPACA9
BioMutasearch SPACA9
DgiDB (Drug Gene Interaction Database)SPACA9
DoCM (Curated mutations)SPACA9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPACA9 (select a term)
intoGenSPACA9
Cancer3DSPACA9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPACA9
Genetic Testing Registry SPACA9
NextProtQ96E40 [Medical]
TSGene11092
GENETestsSPACA9
Target ValidationSPACA9
Huge Navigator SPACA9 [HugePedia]
snp3D : Map Gene to Disease11092
BioCentury BCIQSPACA9
ClinGenSPACA9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11092
Chemical/Pharm GKB GenePA25983
Clinical trialSPACA9
Miscellaneous
canSAR (ICR)SPACA9 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPACA9
EVEXSPACA9
GoPubMedSPACA9
iHOPSPACA9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:43:43 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.