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SPAG11A (sperm associated antigen 11A)

Identity

Alias_symbol (synonym)HE2
EDDM2A
Other alias
HGNC (Hugo) SPAG11A
LocusID (NCBI) 653423
Atlas_Id 74100
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 7847880 and ends at 7863797 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPAG11A   33342
Cards
Entrez_Gene (NCBI)SPAG11A  653423  sperm associated antigen 11A
AliasesEDDM2A; HE2
GeneCards (Weizmann)SPAG11A
Ensembl hg19 (Hinxton)ENSG00000178287 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178287 [Gene_View]  chr8:7847880-7863797 [Contig_View]  SPAG11A [Vega]
ICGC DataPortalENSG00000178287
TCGA cBioPortalSPAG11A
AceView (NCBI)SPAG11A
Genatlas (Paris)SPAG11A
WikiGenes653423
SOURCE (Princeton)SPAG11A
Genetics Home Reference (NIH)SPAG11A
Genomic and cartography
GoldenPath hg38 (UCSC)SPAG11A  -     chr8:7847880-7863797 +  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPAG11A  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblSPAG11A - 8p23.1 [CytoView hg19]  SPAG11A - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBISPAG11A [Mapview hg19]  SPAG11A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF168618 AF168619 AF168620 AF170797 BC058833
RefSeq transcript (Entrez)NM_001081552
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPAG11A
Cluster EST : UnigeneHs.559506 [ NCBI ]
CGAP (NCI)Hs.559506
Alternative Splicing GalleryENSG00000178287
Gene ExpressionSPAG11A [ NCBI-GEO ]   SPAG11A [ EBI - ARRAY_EXPRESS ]   SPAG11A [ SEEK ]   SPAG11A [ MEM ]
Gene Expression Viewer (FireBrowse)SPAG11A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653423
GTEX Portal (Tissue expression)SPAG11A
Human Protein AtlasENSG00000178287-SPAG11A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PDA7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PDA7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PDA7
Splice isoforms : SwissVarQ6PDA7
PhosPhoSitePlusQ6PDA7
Domains : Interpro (EBI)Sperm_Ag_HE2   
Domain families : Pfam (Sanger)Sperm_Ag_HE2 (PF05324)   
Domain families : Pfam (NCBI)pfam05324   
Conserved Domain (NCBI)SPAG11A
DMDM Disease mutations653423
Blocks (Seattle)SPAG11A
SuperfamilyQ6PDA7
Human Protein Atlas [tissue]ENSG00000178287-SPAG11A [tissue]
Peptide AtlasQ6PDA7
IPIIPI00478073   IPI00941663   IPI00396626   
Protein Interaction databases
DIP (DOE-UCLA)Q6PDA7
IntAct (EBI)Q6PDA7
FunCoupENSG00000178287
BioGRIDSPAG11A
STRING (EMBL)SPAG11A
ZODIACSPAG11A
Ontologies - Pathways
QuickGOQ6PDA7
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkSPAG11A
Atlas of Cancer Signalling NetworkSPAG11A
Wikipedia pathwaysSPAG11A
Orthology - Evolution
OrthoDB653423
GeneTree (enSembl)ENSG00000178287
Phylogenetic Trees/Animal Genes : TreeFamSPAG11A
HOVERGENQ6PDA7
HOGENOMQ6PDA7
Homologs : HomoloGeneSPAG11A
Homology/Alignments : Family Browser (UCSC)SPAG11A
Gene fusions - Rearrangements
Tumor Fusion PortalSPAG11A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPAG11A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPAG11A
dbVarSPAG11A
ClinVarSPAG11A
1000_GenomesSPAG11A 
Exome Variant ServerSPAG11A
ExAC (Exome Aggregation Consortium)ENSG00000178287
GNOMAD BrowserENSG00000178287
Genetic variants : HAPMAP653423
Genomic Variants (DGV)SPAG11A [DGVbeta]
DECIPHERSPAG11A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPAG11A 
Mutations
ICGC Data PortalSPAG11A 
TCGA Data PortalSPAG11A 
Broad Tumor PortalSPAG11A
OASIS PortalSPAG11A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPAG11A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPAG11A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPAG11A
DgiDB (Drug Gene Interaction Database)SPAG11A
DoCM (Curated mutations)SPAG11A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPAG11A (select a term)
intoGenSPAG11A
Cancer3DSPAG11A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSPAG11A
MedgenSPAG11A
Genetic Testing Registry SPAG11A
NextProtQ6PDA7 [Medical]
TSGene653423
GENETestsSPAG11A
Target ValidationSPAG11A
Huge Navigator SPAG11A [HugePedia]
snp3D : Map Gene to Disease653423
BioCentury BCIQSPAG11A
ClinGenSPAG11A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653423
Chemical/Pharm GKB GenePA162404366
Clinical trialSPAG11A
Miscellaneous
canSAR (ICR)SPAG11A (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPAG11A
EVEXSPAG11A
GoPubMedSPAG11A
iHOPSPAG11A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:19:03 CET 2017

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