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SPAG11B (sperm associated antigen 11B)

Identity

Alias_symbol (synonym)HE2
EP2
EP2C
EP2D
EDDM2B
Other aliasHE2C
SPAG11
HGNC (Hugo) SPAG11B
LocusID (NCBI) 10407
Atlas_Id 55955
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 7308086 and ends at 7321192 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARMC1 (8q13.1) / SPAG11B (8p23.1)TRAK2 (2q33.1) / SPAG11B (8p23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPAG11B   14534
Cards
Entrez_Gene (NCBI)SPAG11B  10407  sperm associated antigen 11B
AliasesEDDM2B; EP2; EP2C; EP2D; 
HE2; HE2C; SPAG11
GeneCards (Weizmann)SPAG11B
Ensembl hg19 (Hinxton)ENSG00000164871 [Gene_View]  chr8:7308086-7321192 [Contig_View]  SPAG11B [Vega]
Ensembl hg38 (Hinxton)ENSG00000164871 [Gene_View]  chr8:7308086-7321192 [Contig_View]  SPAG11B [Vega]
ICGC DataPortalENSG00000164871
TCGA cBioPortalSPAG11B
AceView (NCBI)SPAG11B
Genatlas (Paris)SPAG11B
WikiGenes10407
SOURCE (Princeton)SPAG11B
Genetics Home Reference (NIH)SPAG11B
Genomic and cartography
GoldenPath hg19 (UCSC)SPAG11B  -     chr8:7308086-7321192 -  8p23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPAG11B  -     8p23.1   [Description]    (hg38-Dec_2013)
EnsemblSPAG11B - 8p23.1 [CytoView hg19]  SPAG11B - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBISPAG11B [Mapview hg19]  SPAG11B [Mapview hg38]
OMIM606560   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_016512 NM_058200 NM_058201 NM_058202 NM_058203 NM_058206 NM_058207
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_029571 NT_187570
Consensus coding sequences : CCDS (NCBI)SPAG11B
Cluster EST : UnigeneHs.610978 [ NCBI ]
CGAP (NCI)Hs.610978
Alternative Splicing GalleryENSG00000164871
Gene ExpressionSPAG11B [ NCBI-GEO ]   SPAG11B [ EBI - ARRAY_EXPRESS ]   SPAG11B [ SEEK ]   SPAG11B [ MEM ]
Gene Expression Viewer (FireBrowse)SPAG11B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10407
GTEX Portal (Tissue expression)SPAG11B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08648   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ08648  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ08648
Splice isoforms : SwissVarQ08648
PhosPhoSitePlusQ08648
Domains : Interpro (EBI)Sperm_Ag_HE2   
Domain families : Pfam (Sanger)Sperm_Ag_HE2 (PF05324)   
Domain families : Pfam (NCBI)pfam05324   
Conserved Domain (NCBI)SPAG11B
DMDM Disease mutations10407
Blocks (Seattle)SPAG11B
SuperfamilyQ08648
Human Protein AtlasENSG00000164871
Peptide AtlasQ08648
HPRD07583
IPIIPI00220127   IPI00472809   IPI01010567   IPI01012483   IPI00976028   IPI00940846   IPI00556639   
Protein Interaction databases
DIP (DOE-UCLA)Q08648
IntAct (EBI)Q08648
FunCoupENSG00000164871
BioGRIDSPAG11B
STRING (EMBL)SPAG11B
ZODIACSPAG11B
Ontologies - Pathways
QuickGOQ08648
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSPAG11B
Atlas of Cancer Signalling NetworkSPAG11B
Wikipedia pathwaysSPAG11B
Orthology - Evolution
OrthoDB10407
GeneTree (enSembl)ENSG00000164871
Phylogenetic Trees/Animal Genes : TreeFamSPAG11B
HOVERGENQ08648
HOGENOMQ08648
Homologs : HomoloGeneSPAG11B
Homology/Alignments : Family Browser (UCSC)SPAG11B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPAG11B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPAG11B
dbVarSPAG11B
ClinVarSPAG11B
1000_GenomesSPAG11B 
Exome Variant ServerSPAG11B
ExAC (Exome Aggregation Consortium)SPAG11B (select the gene name)
Genetic variants : HAPMAP10407
Genomic Variants (DGV)SPAG11B [DGVbeta]
DECIPHER (Syndromes)8:7308086-7321192  ENSG00000164871
CONAN: Copy Number AnalysisSPAG11B 
Mutations
ICGC Data PortalSPAG11B 
TCGA Data PortalSPAG11B 
Broad Tumor PortalSPAG11B
OASIS PortalSPAG11B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPAG11B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPAG11B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPAG11B
DgiDB (Drug Gene Interaction Database)SPAG11B
DoCM (Curated mutations)SPAG11B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPAG11B (select a term)
intoGenSPAG11B
Cancer3DSPAG11B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606560   
Orphanet
MedgenSPAG11B
Genetic Testing Registry SPAG11B
NextProtQ08648 [Medical]
TSGene10407
GENETestsSPAG11B
Huge Navigator SPAG11B [HugePedia]
snp3D : Map Gene to Disease10407
BioCentury BCIQSPAG11B
ClinGenSPAG11B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10407
Chemical/Pharm GKB GenePA37894
Clinical trialSPAG11B
Miscellaneous
canSAR (ICR)SPAG11B (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPAG11B
EVEXSPAG11B
GoPubMedSPAG11B
iHOPSPAG11B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:20:31 CEST 2017

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