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SPAG16 (sperm associated antigen 16)

Identity

Alias_symbol (synonym)PF20
FLJ22724
DKFZp666P1710
WDR29
Other alias
HGNC (Hugo) SPAG16
LocusID (NCBI) 79582
Atlas_Id 74102
Location 2q34  [Link to chromosome band 2q34]
Location_base_pair Starts at 213284379 and ends at 213317985 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DNAJC6 (1p31.3) / SPAG16 (2q34)IKZF2 (2q34) / SPAG16 (2q34)MYO1B (2q32.3) / SPAG16 (2q34)
PGAP1 (2q33.1) / SPAG16 (2q34)ZFYVE9 (1p32.3) / SPAG16 (2q34)PGAP1 SPAG16
MYO1B SPAG16

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPAG16   23225
Cards
Entrez_Gene (NCBI)SPAG16  79582  sperm associated antigen 16
AliasesPF20; WDR29
GeneCards (Weizmann)SPAG16
Ensembl hg19 (Hinxton)ENSG00000144451 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144451 [Gene_View]  chr2:213284379-213317985 [Contig_View]  SPAG16 [Vega]
ICGC DataPortalENSG00000144451
TCGA cBioPortalSPAG16
AceView (NCBI)SPAG16
Genatlas (Paris)SPAG16
WikiGenes79582
SOURCE (Princeton)SPAG16
Genetics Home Reference (NIH)SPAG16
Genomic and cartography
GoldenPath hg38 (UCSC)SPAG16  -     chr2:213284379-213317985 +  2q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPAG16  -     2q34   [Description]    (hg19-Feb_2009)
EnsemblSPAG16 - 2q34 [CytoView hg19]  SPAG16 - 2q34 [CytoView hg38]
Mapping of homologs : NCBISPAG16 [Mapview hg19]  SPAG16 [Mapview hg38]
OMIM612173   
Gene and transcription
Genbank (Entrez)AF310672 AF426740 AF490390 AK026377 AK095036
RefSeq transcript (Entrez)NM_001025436 NM_024532
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPAG16
Cluster EST : UnigeneHs.743365 [ NCBI ]
CGAP (NCI)Hs.743365
Alternative Splicing GalleryENSG00000144451
Gene ExpressionSPAG16 [ NCBI-GEO ]   SPAG16 [ EBI - ARRAY_EXPRESS ]   SPAG16 [ SEEK ]   SPAG16 [ MEM ]
Gene Expression Viewer (FireBrowse)SPAG16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79582
GTEX Portal (Tissue expression)SPAG16
Human Protein AtlasENSG00000144451-SPAG16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0X2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0X2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0X2
Splice isoforms : SwissVarQ8N0X2
PhosPhoSitePlusQ8N0X2
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)SPAG16
DMDM Disease mutations79582
Blocks (Seattle)SPAG16
SuperfamilyQ8N0X2
Human Protein Atlas [tissue]ENSG00000144451-SPAG16 [tissue]
Peptide AtlasQ8N0X2
HPRD18089
IPIIPI00166103   IPI00470876   IPI00396021   IPI00556405   IPI00556122   IPI00927760   IPI00924838   IPI00925239   IPI00926686   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0X2
IntAct (EBI)Q8N0X2
FunCoupENSG00000144451
BioGRIDSPAG16
STRING (EMBL)SPAG16
ZODIACSPAG16
Ontologies - Pathways
QuickGOQ8N0X2
Ontology : AmiGOnucleus  cytoplasm  axoneme  sperm axoneme assembly  motile cilium  axoneme assembly  microtubule sliding  cilium assembly  cilium movement involved in cell motility  cell motility in response to calcium ion  axonemal central apparatus  
Ontology : EGO-EBInucleus  cytoplasm  axoneme  sperm axoneme assembly  motile cilium  axoneme assembly  microtubule sliding  cilium assembly  cilium movement involved in cell motility  cell motility in response to calcium ion  axonemal central apparatus  
NDEx NetworkSPAG16
Atlas of Cancer Signalling NetworkSPAG16
Wikipedia pathwaysSPAG16
Orthology - Evolution
OrthoDB79582
GeneTree (enSembl)ENSG00000144451
Phylogenetic Trees/Animal Genes : TreeFamSPAG16
HOVERGENQ8N0X2
HOGENOMQ8N0X2
Homologs : HomoloGeneSPAG16
Homology/Alignments : Family Browser (UCSC)SPAG16
Gene fusions - Rearrangements
Fusion: TCGAPGAP1 SPAG16
Fusion: TCGAMYO1B SPAG16
Fusion: Tumor Portal SPAG16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPAG16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPAG16
dbVarSPAG16
ClinVarSPAG16
1000_GenomesSPAG16 
Exome Variant ServerSPAG16
ExAC (Exome Aggregation Consortium)ENSG00000144451
GNOMAD BrowserENSG00000144451
Genetic variants : HAPMAP79582
Genomic Variants (DGV)SPAG16 [DGVbeta]
DECIPHERSPAG16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPAG16 
Mutations
ICGC Data PortalSPAG16 
TCGA Data PortalSPAG16 
Broad Tumor PortalSPAG16
OASIS PortalSPAG16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPAG16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPAG16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPAG16
DgiDB (Drug Gene Interaction Database)SPAG16
DoCM (Curated mutations)SPAG16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPAG16 (select a term)
intoGenSPAG16
Cancer3DSPAG16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612173   
Orphanet
MedgenSPAG16
Genetic Testing Registry SPAG16
NextProtQ8N0X2 [Medical]
TSGene79582
GENETestsSPAG16
Target ValidationSPAG16
Huge Navigator SPAG16 [HugePedia]
snp3D : Map Gene to Disease79582
BioCentury BCIQSPAG16
ClinGenSPAG16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79582
Chemical/Pharm GKB GenePA134887898
Clinical trialSPAG16
Miscellaneous
canSAR (ICR)SPAG16 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPAG16
EVEXSPAG16
GoPubMedSPAG16
iHOPSPAG16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:30:33 CET 2017

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