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SPAG17 (sperm associated antigen 17)

Identity

Alias_symbol (synonym)FLJ34497
PF6
RP4-776P7.2
CT143
Other alias
HGNC (Hugo) SPAG17
LocusID (NCBI) 200162
Atlas_Id 74103
Location 1p12  [Link to chromosome band 1p12]
Location_base_pair Starts at 118496288 and ends at 118727848 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CERS4 (19p13.2) / SPAG17 (1p12)GDAP2 (1p12) / SPAG17 (1p12)MAGI3 (1p13.2) / SPAG17 (1p12)
NOTCH2 (1p12) / SPAG17 (1p12)SORT1 (1p13.3) / SPAG17 (1p12)SPAG17 (1p12) / C1orf194 (1p13.3)
SPAG17 (1p12) / NDUFV2 (18p11.22)SPAG17 (1p12) / PCF11 (11q14.1)SPAG17 (1p12) / RABGAP1L (1q25.1)
MAGI3 SPAG17GDAP2 SPAG17CERS4 SPAG17
NOTCH2 SPAG17SPAG17 PCF11SPAG17 RABGAP1L

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPAG17   26620
Cards
Entrez_Gene (NCBI)SPAG17  200162  sperm associated antigen 17
AliasesCT143; PF6
GeneCards (Weizmann)SPAG17
Ensembl hg19 (Hinxton)ENSG00000155761 [Gene_View]  chr1:118496288-118727848 [Contig_View]  SPAG17 [Vega]
Ensembl hg38 (Hinxton)ENSG00000155761 [Gene_View]  chr1:118496288-118727848 [Contig_View]  SPAG17 [Vega]
ICGC DataPortalENSG00000155761
TCGA cBioPortalSPAG17
AceView (NCBI)SPAG17
Genatlas (Paris)SPAG17
WikiGenes200162
SOURCE (Princeton)SPAG17
Genetics Home Reference (NIH)SPAG17
Genomic and cartography
GoldenPath hg19 (UCSC)SPAG17  -     chr1:118496288-118727848 -  1p12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPAG17  -     1p12   [Description]    (hg38-Dec_2013)
EnsemblSPAG17 - 1p12 [CytoView hg19]  SPAG17 - 1p12 [CytoView hg38]
Mapping of homologs : NCBISPAG17 [Mapview hg19]  SPAG17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091816 AK126319 AK126327 AL137581 AL833485
RefSeq transcript (Entrez)NM_206996
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)SPAG17
Cluster EST : UnigeneHs.528821 [ NCBI ]
CGAP (NCI)Hs.528821
Alternative Splicing GalleryENSG00000155761
Gene ExpressionSPAG17 [ NCBI-GEO ]   SPAG17 [ EBI - ARRAY_EXPRESS ]   SPAG17 [ SEEK ]   SPAG17 [ MEM ]
Gene Expression Viewer (FireBrowse)SPAG17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200162
GTEX Portal (Tissue expression)SPAG17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6Q759   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6Q759  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6Q759
Splice isoforms : SwissVarQ6Q759
PhosPhoSitePlusQ6Q759
Domains : Interpro (EBI)SPAG17   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPAG17
DMDM Disease mutations200162
Blocks (Seattle)SPAG17
SuperfamilyQ6Q759
Human Protein AtlasENSG00000155761
Peptide AtlasQ6Q759
HPRD10146
IPIIPI00174345   IPI00641587   
Protein Interaction databases
DIP (DOE-UCLA)Q6Q759
IntAct (EBI)Q6Q759
FunCoupENSG00000155761
BioGRIDSPAG17
STRING (EMBL)SPAG17
ZODIACSPAG17
Ontologies - Pathways
QuickGOQ6Q759
Ontology : AmiGOnucleoplasm  cytoplasm  microtubule  sperm flagellum  
Ontology : EGO-EBInucleoplasm  cytoplasm  microtubule  sperm flagellum  
NDEx NetworkSPAG17
Atlas of Cancer Signalling NetworkSPAG17
Wikipedia pathwaysSPAG17
Orthology - Evolution
OrthoDB200162
GeneTree (enSembl)ENSG00000155761
Phylogenetic Trees/Animal Genes : TreeFamSPAG17
HOVERGENQ6Q759
HOGENOMQ6Q759
Homologs : HomoloGeneSPAG17
Homology/Alignments : Family Browser (UCSC)SPAG17
Gene fusions - Rearrangements
Fusion: TCGAMAGI3 SPAG17
Fusion: TCGAGDAP2 SPAG17
Fusion: TCGACERS4 SPAG17
Fusion: TCGANOTCH2 SPAG17
Fusion: TCGASPAG17 PCF11
Fusion: TCGASPAG17 RABGAP1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPAG17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPAG17
dbVarSPAG17
ClinVarSPAG17
1000_GenomesSPAG17 
Exome Variant ServerSPAG17
ExAC (Exome Aggregation Consortium)SPAG17 (select the gene name)
Genetic variants : HAPMAP200162
Genomic Variants (DGV)SPAG17 [DGVbeta]
DECIPHER (Syndromes)1:118496288-118727848  ENSG00000155761
CONAN: Copy Number AnalysisSPAG17 
Mutations
ICGC Data PortalSPAG17 
TCGA Data PortalSPAG17 
Broad Tumor PortalSPAG17
OASIS PortalSPAG17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPAG17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPAG17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPAG17
DgiDB (Drug Gene Interaction Database)SPAG17
DoCM (Curated mutations)SPAG17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPAG17 (select a term)
intoGenSPAG17
Cancer3DSPAG17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPAG17
Genetic Testing Registry SPAG17
NextProtQ6Q759 [Medical]
TSGene200162
GENETestsSPAG17
Huge Navigator SPAG17 [HugePedia]
snp3D : Map Gene to Disease200162
BioCentury BCIQSPAG17
ClinGenSPAG17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200162
Chemical/Pharm GKB GenePA142670888
Clinical trialSPAG17
Miscellaneous
canSAR (ICR)SPAG17 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPAG17
EVEXSPAG17
GoPubMedSPAG17
iHOPSPAG17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:15 CET 2017

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