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SPAG6 (sperm associated antigen 6)

Identity

Alias (NCBI)CFAP194
CT141
FAP194
Repro-SA-1
pf16
HGNC (Hugo) SPAG6
HGNC Alias symbRepro-SA-1
PF16
CT141
FAP194
CFAP194
HGNC Alias nameaxoneme central apparatus protein
LocusID (NCBI) 9576
Atlas_Id 55971
Location 10p12.2  [Link to chromosome band 10p12]
Location_base_pair Starts at 22345496 and ends at 22417610 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AGBL4 (1p33) / SPAG6 (10p12.2)GFM2 (5q13.3) / SPAG6 (10p12.2)KIAA1217 (10p12.2) / SPAG6 (10p12.2)
SPAG6 (10p12.2) / PLXDC2 (10p12.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPAG6   11215
Cards
Entrez_Gene (NCBI)SPAG6    sperm associated antigen 6
AliasesCFAP194; CT141; FAP194; Repro-SA-1; 
pf16
GeneCards (Weizmann)SPAG6
Ensembl hg19 (Hinxton)ENSG00000077327 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000077327 [Gene_View]  ENSG00000077327 [Sequence]  chr10:22345496-22417610 [Contig_View]  SPAG6 [Vega]
ICGC DataPortalENSG00000077327
TCGA cBioPortalSPAG6
AceView (NCBI)SPAG6
Genatlas (Paris)SPAG6
SOURCE (Princeton)SPAG6
Genetics Home Reference (NIH)SPAG6
Genomic and cartography
GoldenPath hg38 (UCSC)SPAG6  -     chr10:22345496-22417610 +  10p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPAG6  -     10p12.2   [Description]    (hg19-Feb_2009)
GoldenPathSPAG6 - 10p12.2 [CytoView hg19]  SPAG6 - 10p12.2 [CytoView hg38]
ImmunoBaseENSG00000077327
Genome Data Viewer NCBISPAG6 [Mapview hg19]  
OMIM605730   
Gene and transcription
Genbank (Entrez)AF079363 AK289903 AK302194 AK310247 AL080136
RefSeq transcript (Entrez)NM_001253854 NM_001253855 NM_012443 NM_172242
Consensus coding sequences : CCDS (NCBI)SPAG6
Gene ExpressionSPAG6 [ NCBI-GEO ]   SPAG6 [ EBI - ARRAY_EXPRESS ]   SPAG6 [ SEEK ]   SPAG6 [ MEM ]
Gene Expression Viewer (FireBrowse)SPAG6 [ Firebrowse - Broad ]
GenevisibleExpression of SPAG6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9576
GTEX Portal (Tissue expression)SPAG6
Human Protein AtlasENSG00000077327-SPAG6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75602   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75602  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75602
PhosPhoSitePlusO75602
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Armadillo   
Domain families : Pfam (Sanger)Arm (PF00514)   
Domain families : Pfam (NCBI)pfam00514   
Domain families : Smart (EMBL)ARM (SM00185)  
Conserved Domain (NCBI)SPAG6
SuperfamilyO75602
AlphaFold pdb e-kbO75602   
Human Protein Atlas [tissue]ENSG00000077327-SPAG6 [tissue]
HPRD09305
Protein Interaction databases
DIP (DOE-UCLA)O75602
IntAct (EBI)O75602
BioGRIDSPAG6
STRING (EMBL)SPAG6
ZODIACSPAG6
Ontologies - Pathways
QuickGOO75602
Ontology : AmiGOnucleus  microtubule  axoneme  axoneme  microtubule cytoskeleton  cell projection organization  sperm principal piece  
Ontology : EGO-EBInucleus  microtubule  axoneme  axoneme  microtubule cytoskeleton  cell projection organization  sperm principal piece  
NDEx NetworkSPAG6
Atlas of Cancer Signalling NetworkSPAG6
Wikipedia pathwaysSPAG6
Orthology - Evolution
OrthoDB9576
GeneTree (enSembl)ENSG00000077327
Phylogenetic Trees/Animal Genes : TreeFamSPAG6
Homologs : HomoloGeneSPAG6
Homology/Alignments : Family Browser (UCSC)SPAG6
Gene fusions - Rearrangements
Fusion : QuiverSPAG6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPAG6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPAG6
dbVarSPAG6
ClinVarSPAG6
MonarchSPAG6
1000_GenomesSPAG6 
Exome Variant ServerSPAG6
GNOMAD BrowserENSG00000077327
Varsome BrowserSPAG6
ACMGSPAG6 variants
VarityO75602
Genomic Variants (DGV)SPAG6 [DGVbeta]
DECIPHERSPAG6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPAG6 
Mutations
ICGC Data PortalSPAG6 
TCGA Data PortalSPAG6 
Broad Tumor PortalSPAG6
OASIS PortalSPAG6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPAG6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPAG6
Mutations and Diseases : HGMDSPAG6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPAG6
DgiDB (Drug Gene Interaction Database)SPAG6
DoCM (Curated mutations)SPAG6
CIViC (Clinical Interpretations of Variants in Cancer)SPAG6
Cancer3DSPAG6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605730   
Orphanet
DisGeNETSPAG6
MedgenSPAG6
Genetic Testing Registry SPAG6
NextProtO75602 [Medical]
GENETestsSPAG6
Target ValidationSPAG6
Huge Navigator SPAG6 [HugePedia]
ClinGenSPAG6
Clinical trials, drugs, therapy
MyCancerGenomeSPAG6
Protein Interactions : CTDSPAG6
Pharm GKB GenePA36051
PharosO75602
Clinical trialSPAG6
Miscellaneous
canSAR (ICR)SPAG6
HarmonizomeSPAG6
DataMed IndexSPAG6
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPAG6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:32:45 CEST 2021

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