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SPAG7 (sperm associated antigen 7)

Identity

Alias_symbol (synonym)FSA-1
ACRP
MGC20134
Other alias
HGNC (Hugo) SPAG7
LocusID (NCBI) 9552
Atlas_Id 74106
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 4862521 and ends at 4871132 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SPAG7 (17p13.2) / CAMTA2 (17p13.2)SPAG7 (17p13.2) / SPAG7 (17p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPAG7   11216
Cards
Entrez_Gene (NCBI)SPAG7  9552  sperm associated antigen 7
AliasesACRP; FSA-1
GeneCards (Weizmann)SPAG7
Ensembl hg19 (Hinxton)ENSG00000091640 [Gene_View]  chr17:4862521-4871132 [Contig_View]  SPAG7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000091640 [Gene_View]  chr17:4862521-4871132 [Contig_View]  SPAG7 [Vega]
ICGC DataPortalENSG00000091640
TCGA cBioPortalSPAG7
AceView (NCBI)SPAG7
Genatlas (Paris)SPAG7
WikiGenes9552
SOURCE (Princeton)SPAG7
Genetics Home Reference (NIH)SPAG7
Genomic and cartography
GoldenPath hg19 (UCSC)SPAG7  -     chr17:4862521-4871132 -  17p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPAG7  -     17p13.2   [Description]    (hg38-Dec_2013)
EnsemblSPAG7 - 17p13.2 [CytoView hg19]  SPAG7 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBISPAG7 [Mapview hg19]  SPAG7 [Mapview hg38]
OMIM610056   
Gene and transcription
Genbank (Entrez)AF047437 AK123065 AK312174 BC007819 BC011934
RefSeq transcript (Entrez)NM_004890
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)SPAG7
Cluster EST : UnigeneHs.90436 [ NCBI ]
CGAP (NCI)Hs.90436
Alternative Splicing GalleryENSG00000091640
Gene ExpressionSPAG7 [ NCBI-GEO ]   SPAG7 [ EBI - ARRAY_EXPRESS ]   SPAG7 [ SEEK ]   SPAG7 [ MEM ]
Gene Expression Viewer (FireBrowse)SPAG7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9552
GTEX Portal (Tissue expression)SPAG7
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75391   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75391  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75391
Splice isoforms : SwissVarO75391
PhosPhoSitePlusO75391
Domaine pattern : Prosite (Expaxy)R3H (PS51061)   
Domains : Interpro (EBI)R3H_ss-bd    SPAG7   
Domain families : Pfam (Sanger)R3H (PF01424)   
Domain families : Pfam (NCBI)pfam01424   
Domain families : Smart (EMBL)R3H (SM00393)  
Conserved Domain (NCBI)SPAG7
DMDM Disease mutations9552
Blocks (Seattle)SPAG7
PDB (SRS)2CPM   
PDB (PDBSum)2CPM   
PDB (IMB)2CPM   
PDB (RSDB)2CPM   
Structural Biology KnowledgeBase2CPM   
SCOP (Structural Classification of Proteins)2CPM   
CATH (Classification of proteins structures)2CPM   
SuperfamilyO75391
Human Protein AtlasENSG00000091640
Peptide AtlasO75391
HPRD10247
IPIIPI00006863   
Protein Interaction databases
DIP (DOE-UCLA)O75391
IntAct (EBI)O75391
FunCoupENSG00000091640
BioGRIDSPAG7
STRING (EMBL)SPAG7
ZODIACSPAG7
Ontologies - Pathways
QuickGOO75391
Ontology : AmiGOnucleic acid binding  nucleus  
Ontology : EGO-EBInucleic acid binding  nucleus  
NDEx NetworkSPAG7
Atlas of Cancer Signalling NetworkSPAG7
Wikipedia pathwaysSPAG7
Orthology - Evolution
OrthoDB9552
GeneTree (enSembl)ENSG00000091640
Phylogenetic Trees/Animal Genes : TreeFamSPAG7
HOVERGENO75391
HOGENOMO75391
Homologs : HomoloGeneSPAG7
Homology/Alignments : Family Browser (UCSC)SPAG7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPAG7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPAG7
dbVarSPAG7
ClinVarSPAG7
1000_GenomesSPAG7 
Exome Variant ServerSPAG7
ExAC (Exome Aggregation Consortium)SPAG7 (select the gene name)
Genetic variants : HAPMAP9552
Genomic Variants (DGV)SPAG7 [DGVbeta]
DECIPHER (Syndromes)17:4862521-4871132  ENSG00000091640
CONAN: Copy Number AnalysisSPAG7 
Mutations
ICGC Data PortalSPAG7 
TCGA Data PortalSPAG7 
Broad Tumor PortalSPAG7
OASIS PortalSPAG7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPAG7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPAG7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPAG7
DgiDB (Drug Gene Interaction Database)SPAG7
DoCM (Curated mutations)SPAG7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPAG7 (select a term)
intoGenSPAG7
Cancer3DSPAG7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610056   
Orphanet
MedgenSPAG7
Genetic Testing Registry SPAG7
NextProtO75391 [Medical]
TSGene9552
GENETestsSPAG7
Huge Navigator SPAG7 [HugePedia]
snp3D : Map Gene to Disease9552
BioCentury BCIQSPAG7
ClinGenSPAG7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9552
Chemical/Pharm GKB GenePA36052
Clinical trialSPAG7
Miscellaneous
canSAR (ICR)SPAG7 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPAG7
EVEXSPAG7
GoPubMedSPAG7
iHOPSPAG7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:16 CET 2017

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