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SPAG8 (sperm associated antigen 8)

Identity

Alias_symbol (synonym)hSMP-1
HSD-1
BS-84
SPAG3
CT142
Other aliasCILD28
SMP1
HGNC (Hugo) SPAG8
LocusID (NCBI) 26206
Atlas_Id 74107
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 35809807 and ends at 35812259 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPAG8   14105
Cards
Entrez_Gene (NCBI)SPAG8  26206  sperm associated antigen 8
AliasesBS-84; CILD28; CT142; HSD-1; 
SMP1; SPAG3; hSMP-1
GeneCards (Weizmann)SPAG8
Ensembl hg19 (Hinxton)ENSG00000137098 [Gene_View]  chr9:35809807-35812259 [Contig_View]  SPAG8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000137098 [Gene_View]  chr9:35809807-35812259 [Contig_View]  SPAG8 [Vega]
ICGC DataPortalENSG00000137098
TCGA cBioPortalSPAG8
AceView (NCBI)SPAG8
Genatlas (Paris)SPAG8
WikiGenes26206
SOURCE (Princeton)SPAG8
Genetics Home Reference (NIH)SPAG8
Genomic and cartography
GoldenPath hg19 (UCSC)SPAG8  -     chr9:35809807-35812259 -  9p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPAG8  -     9p13.3   [Description]    (hg38-Dec_2013)
EnsemblSPAG8 - 9p13.3 [CytoView hg19]  SPAG8 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBISPAG8 [Mapview hg19]  SPAG8 [Mapview hg38]
OMIM605731   
Gene and transcription
Genbank (Entrez)AI028727 AK302313 BC019247 BI757195 CA314354
RefSeq transcript (Entrez)NM_001039592 NM_012436 NM_172312
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)SPAG8
Cluster EST : UnigeneHs.256747 [ NCBI ]
CGAP (NCI)Hs.256747
Alternative Splicing GalleryENSG00000137098
Gene ExpressionSPAG8 [ NCBI-GEO ]   SPAG8 [ EBI - ARRAY_EXPRESS ]   SPAG8 [ SEEK ]   SPAG8 [ MEM ]
Gene Expression Viewer (FireBrowse)SPAG8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26206
GTEX Portal (Tissue expression)SPAG8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99932   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99932  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99932
Splice isoforms : SwissVarQ99932
PhosPhoSitePlusQ99932
Domains : Interpro (EBI)Sperm-assoc_Ag8   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPAG8
DMDM Disease mutations26206
Blocks (Seattle)SPAG8
SuperfamilyQ99932
Human Protein AtlasENSG00000137098
Peptide AtlasQ99932
HPRD12039
IPIIPI00945476   IPI00291744   IPI00945128   IPI00150136   IPI00946030   IPI00944987   IPI00946953   
Protein Interaction databases
DIP (DOE-UCLA)Q99932
IntAct (EBI)Q99932
FunCoupENSG00000137098
BioGRIDSPAG8
STRING (EMBL)SPAG8
ZODIACSPAG8
Ontologies - Pathways
QuickGOQ99932
Ontology : AmiGOacrosomal vesicle  molecular_function  protein binding  nucleus  microtubule binding  biological_process  membrane  positive regulation of protein binding  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIacrosomal vesicle  molecular_function  protein binding  nucleus  microtubule binding  biological_process  membrane  positive regulation of protein binding  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkSPAG8
Atlas of Cancer Signalling NetworkSPAG8
Wikipedia pathwaysSPAG8
Orthology - Evolution
OrthoDB26206
GeneTree (enSembl)ENSG00000137098
Phylogenetic Trees/Animal Genes : TreeFamSPAG8
HOVERGENQ99932
HOGENOMQ99932
Homologs : HomoloGeneSPAG8
Homology/Alignments : Family Browser (UCSC)SPAG8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPAG8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPAG8
dbVarSPAG8
ClinVarSPAG8
1000_GenomesSPAG8 
Exome Variant ServerSPAG8
ExAC (Exome Aggregation Consortium)SPAG8 (select the gene name)
Genetic variants : HAPMAP26206
Genomic Variants (DGV)SPAG8 [DGVbeta]
DECIPHER (Syndromes)9:35809807-35812259  ENSG00000137098
CONAN: Copy Number AnalysisSPAG8 
Mutations
ICGC Data PortalSPAG8 
TCGA Data PortalSPAG8 
Broad Tumor PortalSPAG8
OASIS PortalSPAG8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPAG8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPAG8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPAG8
DgiDB (Drug Gene Interaction Database)SPAG8
DoCM (Curated mutations)SPAG8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPAG8 (select a term)
intoGenSPAG8
Cancer3DSPAG8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605731   
Orphanet
MedgenSPAG8
Genetic Testing Registry SPAG8
NextProtQ99932 [Medical]
TSGene26206
GENETestsSPAG8
Huge Navigator SPAG8 [HugePedia]
snp3D : Map Gene to Disease26206
BioCentury BCIQSPAG8
ClinGenSPAG8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26206
Chemical/Pharm GKB GenePA37843
Clinical trialSPAG8
Miscellaneous
canSAR (ICR)SPAG8 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPAG8
EVEXSPAG8
GoPubMedSPAG8
iHOPSPAG8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:16 CET 2017

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