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SPANXA1 (sperm protein associated with the nucleus, X-linked, family member A1)

Identity

Alias (NCBI)CT11.1
CT11.3
NAP-X
SPAN-X
SPAN-Xa
SPAN-Xb
SPANX
SPANX-A
HGNC (Hugo) SPANXA1
HGNC Alias symbNAP-X
SPAN-Xa
SPAN-Xb
CT11.1
HGNC Alias namecancer/testis antigen family 11, member 1
HGNC Previous nameSPANX
HGNC Previous namesperm protein associated with the nucleus, X chromosome, family member A1
LocusID (NCBI) 30014
Atlas_Id 42362
Location Xq27.2  [Link to chromosome band Xq27]
Location_base_pair Starts at 141583674 and ends at 141584738 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPANXA1   11218
Cards
Entrez_Gene (NCBI)SPANXA1    sperm protein associated with the nucleus, X-linked, family member A1
AliasesCT11.1; CT11.3; NAP-X; SPAN-X; 
SPAN-Xa; SPAN-Xb; SPANX; SPANX-A
GeneCards (Weizmann)SPANXA1
Ensembl hg19 (Hinxton)ENSG00000198021 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198021 [Gene_View]  ENSG00000198021 [Sequence]  chrX:141583674-141584738 [Contig_View]  SPANXA1 [Vega]
ICGC DataPortalENSG00000198021
TCGA cBioPortalSPANXA1
AceView (NCBI)SPANXA1
Genatlas (Paris)SPANXA1
SOURCE (Princeton)SPANXA1
Genetics Home Reference (NIH)SPANXA1
Genomic and cartography
GoldenPath hg38 (UCSC)SPANXA1  -     chrX:141583674-141584738 -  Xq27.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPANXA1  -     Xq27.2   [Description]    (hg19-Feb_2009)
GoldenPathSPANXA1 - Xq27.2 [CytoView hg19]  SPANXA1 - Xq27.2 [CytoView hg38]
ImmunoBaseENSG00000198021
Genome Data Viewer NCBISPANXA1 [Mapview hg19]  
OMIM300305   
Gene and transcription
Genbank (Entrez)AF098306 AI208372 AJ238277 AK225988 AY920732
RefSeq transcript (Entrez)NM_013453
Consensus coding sequences : CCDS (NCBI)SPANXA1
Gene ExpressionSPANXA1 [ NCBI-GEO ]   SPANXA1 [ EBI - ARRAY_EXPRESS ]   SPANXA1 [ SEEK ]   SPANXA1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXA1 [ Firebrowse - Broad ]
GenevisibleExpression of SPANXA1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)30014
GTEX Portal (Tissue expression)SPANXA1
Human Protein AtlasENSG00000198021-SPANXA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NS26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NS26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NS26
PhosPhoSitePlusQ9NS26
Domains : Interpro (EBI)SPAN-X_fam   
Domain families : Pfam (Sanger)SPAN-X (PF07458)   
Domain families : Pfam (NCBI)pfam07458   
Conserved Domain (NCBI)SPANXA1
SuperfamilyQ9NS26
AlphaFold pdb e-kbQ9NS26   
Human Protein Atlas [tissue]ENSG00000198021-SPANXA1 [tissue]
HPRD02252
Protein Interaction databases
DIP (DOE-UCLA)Q9NS26
IntAct (EBI)Q9NS26
BioGRIDSPANXA1
STRING (EMBL)SPANXA1
ZODIACSPANXA1
Ontologies - Pathways
QuickGOQ9NS26
Ontology : AmiGOprotein binding  nucleus  cytoplasm  spermatogenesis  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  spermatogenesis  
NDEx NetworkSPANXA1
Atlas of Cancer Signalling NetworkSPANXA1
Wikipedia pathwaysSPANXA1
Orthology - Evolution
OrthoDB30014
GeneTree (enSembl)ENSG00000198021
Phylogenetic Trees/Animal Genes : TreeFamSPANXA1
Homologs : HomoloGeneSPANXA1
Homology/Alignments : Family Browser (UCSC)SPANXA1
Gene fusions - Rearrangements
Fusion : QuiverSPANXA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXA1
dbVarSPANXA1
ClinVarSPANXA1
MonarchSPANXA1
1000_GenomesSPANXA1 
Exome Variant ServerSPANXA1
GNOMAD BrowserENSG00000198021
Varsome BrowserSPANXA1
ACMGSPANXA1 variants
VarityQ9NS26
Genomic Variants (DGV)SPANXA1 [DGVbeta]
DECIPHERSPANXA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPANXA1 
Mutations
ICGC Data PortalSPANXA1 
TCGA Data PortalSPANXA1 
Broad Tumor PortalSPANXA1
OASIS PortalSPANXA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPANXA1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPANXA1
Mutations and Diseases : HGMDSPANXA1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPANXA1
DgiDB (Drug Gene Interaction Database)SPANXA1
DoCM (Curated mutations)SPANXA1
CIViC (Clinical Interpretations of Variants in Cancer)SPANXA1
Cancer3DSPANXA1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300305   
Orphanet
DisGeNETSPANXA1
MedgenSPANXA1
Genetic Testing Registry SPANXA1
NextProtQ9NS26 [Medical]
GENETestsSPANXA1
Target ValidationSPANXA1
Huge Navigator SPANXA1 [HugePedia]
ClinGenSPANXA1
Clinical trials, drugs, therapy
MyCancerGenomeSPANXA1
Protein Interactions : CTDSPANXA1
Pharm GKB GenePA36054
PharosQ9NS26
Clinical trialSPANXA1
Miscellaneous
canSAR (ICR)SPANXA1
HarmonizomeSPANXA1
ARCHS4SPANXA1
DataMed IndexSPANXA1
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPANXA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:00:24 CET 2022

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