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SPANXA1 (sperm protein associated with the nucleus, X-linked, family member A1)

Identity

Alias_namesmember 1
SPANX
Alias_symbol (synonym)NAP-X
SPAN-Xa
SPAN-Xb
CT11.1
Other aliasSPAN-X
SPANX-A
HGNC (Hugo) SPANXA1
LocusID (NCBI) 30014
Atlas_Id 42362
Location Xq27.2  [Link to chromosome band Xq27]
Location_base_pair Starts at 140677835 and ends at 140678899 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPANXA1   11218
Cards
Entrez_Gene (NCBI)SPANXA1  30014  sperm protein associated with the nucleus, X-linked, family member A1
AliasesCT11.1; NAP-X; SPAN-X; SPAN-Xa; 
SPAN-Xb; SPANX; SPANX-A
GeneCards (Weizmann)SPANXA1
Ensembl hg19 (Hinxton)ENSG00000198021 [Gene_View]  chrX:140677835-140678899 [Contig_View]  SPANXA1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198021 [Gene_View]  chrX:140677835-140678899 [Contig_View]  SPANXA1 [Vega]
ICGC DataPortalENSG00000198021
TCGA cBioPortalSPANXA1
AceView (NCBI)SPANXA1
Genatlas (Paris)SPANXA1
WikiGenes30014
SOURCE (Princeton)SPANXA1
Genetics Home Reference (NIH)SPANXA1
Genomic and cartography
GoldenPath hg19 (UCSC)SPANXA1  -     chrX:140677835-140678899 +  Xq27.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPANXA1  -     Xq27.2   [Description]    (hg38-Dec_2013)
EnsemblSPANXA1 - Xq27.2 [CytoView hg19]  SPANXA1 - Xq27.2 [CytoView hg38]
Mapping of homologs : NCBISPANXA1 [Mapview hg19]  SPANXA1 [Mapview hg38]
OMIM300305   
Gene and transcription
Genbank (Entrez)AF098306 AI208372 AJ238277 AK225988 AY920732
RefSeq transcript (Entrez)NM_013453
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)SPANXA1
Cluster EST : UnigeneHs.558533 [ NCBI ]
CGAP (NCI)Hs.558533
Alternative Splicing GalleryENSG00000198021
Gene ExpressionSPANXA1 [ NCBI-GEO ]   SPANXA1 [ EBI - ARRAY_EXPRESS ]   SPANXA1 [ SEEK ]   SPANXA1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)30014
GTEX Portal (Tissue expression)SPANXA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NS26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NS26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NS26
Splice isoforms : SwissVarQ9NS26
PhosPhoSitePlusQ9NS26
Domains : Interpro (EBI)SPAN-X_fam   
Domain families : Pfam (Sanger)SPAN-X (PF07458)   
Domain families : Pfam (NCBI)pfam07458   
Conserved Domain (NCBI)SPANXA1
DMDM Disease mutations30014
Blocks (Seattle)SPANXA1
SuperfamilyQ9NS26
Human Protein AtlasENSG00000198021
Peptide AtlasQ9NS26
HPRD02252
IPIIPI00656052   IPI01024942   
Protein Interaction databases
DIP (DOE-UCLA)Q9NS26
IntAct (EBI)Q9NS26
FunCoupENSG00000198021
BioGRIDSPANXA1
STRING (EMBL)SPANXA1
ZODIACSPANXA1
Ontologies - Pathways
QuickGOQ9NS26
Ontology : AmiGOprotein binding  nucleus  cytoplasm  spermatogenesis  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  spermatogenesis  
NDEx NetworkSPANXA1
Atlas of Cancer Signalling NetworkSPANXA1
Wikipedia pathwaysSPANXA1
Orthology - Evolution
OrthoDB30014
GeneTree (enSembl)ENSG00000198021
Phylogenetic Trees/Animal Genes : TreeFamSPANXA1
HOVERGENQ9NS26
HOGENOMQ9NS26
Homologs : HomoloGeneSPANXA1
Homology/Alignments : Family Browser (UCSC)SPANXA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXA1
dbVarSPANXA1
ClinVarSPANXA1
1000_GenomesSPANXA1 
Exome Variant ServerSPANXA1
ExAC (Exome Aggregation Consortium)SPANXA1 (select the gene name)
Genetic variants : HAPMAP30014
Genomic Variants (DGV)SPANXA1 [DGVbeta]
DECIPHER (Syndromes)X:140677835-140678899  ENSG00000198021
CONAN: Copy Number AnalysisSPANXA1 
Mutations
ICGC Data PortalSPANXA1 
TCGA Data PortalSPANXA1 
Broad Tumor PortalSPANXA1
OASIS PortalSPANXA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPANXA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPANXA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPANXA1
DgiDB (Drug Gene Interaction Database)SPANXA1
DoCM (Curated mutations)SPANXA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPANXA1 (select a term)
intoGenSPANXA1
Cancer3DSPANXA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300305   
Orphanet
MedgenSPANXA1
Genetic Testing Registry SPANXA1
NextProtQ9NS26 [Medical]
TSGene30014
GENETestsSPANXA1
Huge Navigator SPANXA1 [HugePedia]
snp3D : Map Gene to Disease30014
BioCentury BCIQSPANXA1
ClinGenSPANXA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD30014
Chemical/Pharm GKB GenePA36054
Clinical trialSPANXA1
Miscellaneous
canSAR (ICR)SPANXA1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPANXA1
EVEXSPANXA1
GoPubMedSPANXA1
iHOPSPANXA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:20:32 CEST 2017

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