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SPANXA2-OT1 (SPANXA2 overlapping transcript 1)

Identity

Alias_namesCXorf18
chromosome X open reading frame 18
SPANXA2 overlapping transcript 1 (non-protein coding)
Alias_symbol (synonym)FLJ36186
Other alias
HGNC (Hugo) SPANXA2-OT1
LocusID (NCBI) 619455
Atlas_Id 74109
Location Xq27.2  [Link to chromosome band Xq27]
Location_base_pair Starts at 141502849 and ends at 141649939 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AMPH (7p14.1) / SPANXA2-OT1 (Xq27.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPANXA2-OT1   31683
Cards
Entrez_Gene (NCBI)SPANXA2-OT1  619455  SPANXA2 overlapping transcript 1
AliasesCXorf18
GeneCards (Weizmann)SPANXA2-OT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:141502849-141649939 [Contig_View]  SPANXA2-OT1 [Vega]
TCGA cBioPortalSPANXA2-OT1
AceView (NCBI)SPANXA2-OT1
Genatlas (Paris)SPANXA2-OT1
WikiGenes619455
SOURCE (Princeton)SPANXA2-OT1
Genetics Home Reference (NIH)SPANXA2-OT1
Genomic and cartography
GoldenPath hg38 (UCSC)SPANXA2-OT1  -     chrX:141502849-141649939 +  Xq27.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPANXA2-OT1  -     Xq27.2   [Description]    (hg19-Feb_2009)
EnsemblSPANXA2-OT1 - Xq27.2 [CytoView hg19]  SPANXA2-OT1 - Xq27.2 [CytoView hg38]
Mapping of homologs : NCBISPANXA2-OT1 [Mapview hg19]  SPANXA2-OT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093505 DA220378
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPANXA2-OT1
Cluster EST : UnigeneHs.590784 [ NCBI ]
CGAP (NCI)Hs.590784
Gene ExpressionSPANXA2-OT1 [ NCBI-GEO ]   SPANXA2-OT1 [ EBI - ARRAY_EXPRESS ]   SPANXA2-OT1 [ SEEK ]   SPANXA2-OT1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXA2-OT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)619455
GTEX Portal (Tissue expression)SPANXA2-OT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9U9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9U9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9U9
Splice isoforms : SwissVarQ8N9U9
PhosPhoSitePlusQ8N9U9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPANXA2-OT1
DMDM Disease mutations619455
Blocks (Seattle)SPANXA2-OT1
SuperfamilyQ8N9U9
Peptide AtlasQ8N9U9
IPIIPI00167818   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9U9
IntAct (EBI)Q8N9U9
BioGRIDSPANXA2-OT1
STRING (EMBL)SPANXA2-OT1
ZODIACSPANXA2-OT1
Ontologies - Pathways
QuickGOQ8N9U9
Ontology : AmiGOmitochondrion  meiosis I  microtubule binding  positive regulation of apoptotic process  
Ontology : EGO-EBImitochondrion  meiosis I  microtubule binding  positive regulation of apoptotic process  
NDEx NetworkSPANXA2-OT1
Atlas of Cancer Signalling NetworkSPANXA2-OT1
Wikipedia pathwaysSPANXA2-OT1
Orthology - Evolution
OrthoDB619455
Phylogenetic Trees/Animal Genes : TreeFamSPANXA2-OT1
HOVERGENQ8N9U9
HOGENOMQ8N9U9
Homologs : HomoloGeneSPANXA2-OT1
Homology/Alignments : Family Browser (UCSC)SPANXA2-OT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXA2-OT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXA2-OT1
dbVarSPANXA2-OT1
ClinVarSPANXA2-OT1
1000_GenomesSPANXA2-OT1 
Exome Variant ServerSPANXA2-OT1
ExAC (Exome Aggregation Consortium)SPANXA2-OT1 (select the gene name)
Genetic variants : HAPMAP619455
Genomic Variants (DGV)SPANXA2-OT1 [DGVbeta]
DECIPHERSPANXA2-OT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPANXA2-OT1 
Mutations
ICGC Data PortalSPANXA2-OT1 
TCGA Data PortalSPANXA2-OT1 
Broad Tumor PortalSPANXA2-OT1
OASIS PortalSPANXA2-OT1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPANXA2-OT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPANXA2-OT1
DgiDB (Drug Gene Interaction Database)SPANXA2-OT1
DoCM (Curated mutations)SPANXA2-OT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPANXA2-OT1 (select a term)
intoGenSPANXA2-OT1
Cancer3DSPANXA2-OT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPANXA2-OT1
Genetic Testing Registry SPANXA2-OT1
NextProtQ8N9U9 [Medical]
TSGene619455
GENETestsSPANXA2-OT1
Target ValidationSPANXA2-OT1
Huge Navigator SPANXA2-OT1 [HugePedia]
snp3D : Map Gene to Disease619455
BioCentury BCIQSPANXA2-OT1
ClinGenSPANXA2-OT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD619455
Chemical/Pharm GKB GenePA142672061
Clinical trialSPANXA2-OT1
Miscellaneous
canSAR (ICR)SPANXA2-OT1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPANXA2-OT1
EVEXSPANXA2-OT1
GoPubMedSPANXA2-OT1
iHOPSPANXA2-OT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:43:45 CEST 2017

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