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SPANXA2-OT1 (SPANXA2 overlapping transcript 1)

Identity

Alias (NCBI)CXorf18
HGNC (Hugo) SPANXA2-OT1
HGNC Alias symbFLJ36186
HGNC Previous nameCXorf18
HGNC Previous namechromosome X open reading frame 18
 SPANXA2 overlapping transcript 1 (non-protein coding)
LocusID (NCBI) 619455
Atlas_Id 74109
Location Xq27.2  [Link to chromosome band Xq27]
Location_base_pair Starts at 141502849 and ends at 141649939 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AMPH (7p14.1)::SPANXA2-OT1 (Xq27.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPANXA2-OT1   31683
Cards
Entrez_Gene (NCBI)SPANXA2-OT1    SPANXA2 overlapping transcript 1
AliasesCXorf18
GeneCards (Weizmann)SPANXA2-OT1
Ensembl hg19 (Hinxton)ENSG00000277215 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000277215 [Gene_View]  ENSG00000277215 [Sequence]  chrX:141502849-141649939 [Contig_View]  SPANXA2-OT1 [Vega]
ICGC DataPortalENSG00000277215
TCGA cBioPortalSPANXA2-OT1
AceView (NCBI)SPANXA2-OT1
Genatlas (Paris)SPANXA2-OT1
SOURCE (Princeton)SPANXA2-OT1
Genetics Home Reference (NIH)SPANXA2-OT1
Genomic and cartography
GoldenPath hg38 (UCSC)SPANXA2-OT1  -     chrX:141502849-141649939 +  Xq27.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPANXA2-OT1  -     Xq27.2   [Description]    (hg19-Feb_2009)
GoldenPathSPANXA2-OT1 - Xq27.2 [CytoView hg19]  SPANXA2-OT1 - Xq27.2 [CytoView hg38]
ImmunoBaseENSG00000277215
Genome Data Viewer NCBISPANXA2-OT1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK093505 DA220378
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)SPANXA2-OT1
Gene ExpressionSPANXA2-OT1 [ NCBI-GEO ]   SPANXA2-OT1 [ EBI - ARRAY_EXPRESS ]   SPANXA2-OT1 [ SEEK ]   SPANXA2-OT1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXA2-OT1 [ Firebrowse - Broad ]
GenevisibleExpression of SPANXA2-OT1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)619455
GTEX Portal (Tissue expression)SPANXA2-OT1
Human Protein AtlasENSG00000277215-SPANXA2-OT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9U9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9U9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9U9
PhosPhoSitePlusQ8N9U9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPANXA2-OT1
SuperfamilyQ8N9U9
AlphaFold pdb e-kbQ8N9U9   
Human Protein Atlas [tissue]ENSG00000277215-SPANXA2-OT1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q8N9U9
IntAct (EBI)Q8N9U9
BioGRIDSPANXA2-OT1
STRING (EMBL)SPANXA2-OT1
ZODIACSPANXA2-OT1
Ontologies - Pathways
QuickGOQ8N9U9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSPANXA2-OT1
Atlas of Cancer Signalling NetworkSPANXA2-OT1
Wikipedia pathwaysSPANXA2-OT1
Orthology - Evolution
OrthoDB619455
GeneTree (enSembl)ENSG00000277215
Phylogenetic Trees/Animal Genes : TreeFamSPANXA2-OT1
Homologs : HomoloGeneSPANXA2-OT1
Homology/Alignments : Family Browser (UCSC)SPANXA2-OT1
Gene fusions - Rearrangements
Fusion : QuiverSPANXA2-OT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXA2-OT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXA2-OT1
dbVarSPANXA2-OT1
ClinVarSPANXA2-OT1
MonarchSPANXA2-OT1
1000_GenomesSPANXA2-OT1 
Exome Variant ServerSPANXA2-OT1
GNOMAD BrowserENSG00000277215
Varsome BrowserSPANXA2-OT1
ACMGSPANXA2-OT1 variants
VarityQ8N9U9
Genomic Variants (DGV)SPANXA2-OT1 [DGVbeta]
DECIPHERSPANXA2-OT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPANXA2-OT1 
Mutations
ICGC Data PortalSPANXA2-OT1 
TCGA Data PortalSPANXA2-OT1 
Broad Tumor PortalSPANXA2-OT1
OASIS PortalSPANXA2-OT1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPANXA2-OT1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPANXA2-OT1
DgiDB (Drug Gene Interaction Database)SPANXA2-OT1
DoCM (Curated mutations)SPANXA2-OT1
CIViC (Clinical Interpretations of Variants in Cancer)SPANXA2-OT1
Cancer3DSPANXA2-OT1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSPANXA2-OT1
MedgenSPANXA2-OT1
Genetic Testing Registry SPANXA2-OT1
NextProtQ8N9U9 [Medical]
GENETestsSPANXA2-OT1
Target ValidationSPANXA2-OT1
Huge Navigator SPANXA2-OT1 [HugePedia]
ClinGenSPANXA2-OT1
Clinical trials, drugs, therapy
MyCancerGenomeSPANXA2-OT1
Protein Interactions : CTDSPANXA2-OT1
Pharm GKB GenePA142672061
PharosQ8N9U9
Clinical trialSPANXA2-OT1
Miscellaneous
canSAR (ICR)SPANXA2-OT1
HarmonizomeSPANXA2-OT1
ARCHS4SPANXA2-OT1
DataMed IndexSPANXA2-OT1
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPANXA2-OT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:53:38 CET 2022

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