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SPANXA2 (SPANX family, member A2)

Identity

Alias_namesSPANX
SPANX family, member A2
Other aliasCT11.1
SPANX-A
SPANXA
HGNC (Hugo) SPANXA2
LocusID (NCBI) 728712
Atlas_Id 74108
Location Xq27.2  [Link to chromosome band Xq27]
Location_base_pair Starts at 140677835 and ends at 140678899 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPANXA2   14328
Cards
Entrez_Gene (NCBI)SPANXA2  728712  SPANX family, member A2
AliasesCT11.1; SPANX; SPANX-A; SPANXA
GeneCards (Weizmann)SPANXA2
Ensembl hg19 (Hinxton) [Gene_View]  chrX:140677835-140678899 [Contig_View]  SPANXA2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:140677835-140678899 [Contig_View]  SPANXA2 [Vega]
TCGA cBioPortalSPANXA2
AceView (NCBI)SPANXA2
Genatlas (Paris)SPANXA2
WikiGenes728712
SOURCE (Princeton)SPANXA2
Genetics Home Reference (NIH)SPANXA2
Genomic and cartography
GoldenPath hg19 (UCSC)SPANXA2  -     chrX:140677835-140678899 +  Xq27.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPANXA2  -     Xq27.2   [Description]    (hg38-Dec_2013)
EnsemblSPANXA2 - Xq27.2 [CytoView hg19]  SPANXA2 - Xq27.2 [CytoView hg38]
Mapping of homologs : NCBISPANXA2 [Mapview hg19]  SPANXA2 [Mapview hg38]
OMIM300493   
Gene and transcription
Genbank (Entrez)AF098306 AJ238277 AK225988 AY920732 AY920733
RefSeq transcript (Entrez)NM_145662
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)SPANXA2
Cluster EST : UnigeneHs.711784 [ NCBI ]
CGAP (NCI)Hs.711784
Gene ExpressionSPANXA2 [ NCBI-GEO ]   SPANXA2 [ EBI - ARRAY_EXPRESS ]   SPANXA2 [ SEEK ]   SPANXA2 [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728712
GTEX Portal (Tissue expression)SPANXA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NS26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NS26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NS26
Splice isoforms : SwissVarQ9NS26
PhosPhoSitePlusQ9NS26
Domains : Interpro (EBI)SPANX_prot   
Domain families : Pfam (Sanger)SPAN-X (PF07458)   
Domain families : Pfam (NCBI)pfam07458   
Conserved Domain (NCBI)SPANXA2
DMDM Disease mutations728712
Blocks (Seattle)SPANXA2
SuperfamilyQ9NS26
Peptide AtlasQ9NS26
HPRD06720
Protein Interaction databases
DIP (DOE-UCLA)Q9NS26
IntAct (EBI)Q9NS26
BioGRIDSPANXA2
STRING (EMBL)SPANXA2
ZODIACSPANXA2
Ontologies - Pathways
QuickGOQ9NS26
Ontology : AmiGOprotein binding  nucleus  cytoplasm  spermatogenesis  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  spermatogenesis  
NDEx NetworkSPANXA2
Atlas of Cancer Signalling NetworkSPANXA2
Wikipedia pathwaysSPANXA2
Orthology - Evolution
OrthoDB728712
Phylogenetic Trees/Animal Genes : TreeFamSPANXA2
HOVERGENQ9NS26
HOGENOMQ9NS26
Homologs : HomoloGeneSPANXA2
Homology/Alignments : Family Browser (UCSC)SPANXA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXA2
dbVarSPANXA2
ClinVarSPANXA2
1000_GenomesSPANXA2 
Exome Variant ServerSPANXA2
ExAC (Exome Aggregation Consortium)SPANXA2 (select the gene name)
Genetic variants : HAPMAP728712
Genomic Variants (DGV)SPANXA2 [DGVbeta]
DECIPHER (Syndromes)X:140677835-140678899  
CONAN: Copy Number AnalysisSPANXA2 
Mutations
ICGC Data PortalSPANXA2 
TCGA Data PortalSPANXA2 
Broad Tumor PortalSPANXA2
OASIS PortalSPANXA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPANXA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPANXA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPANXA2
DgiDB (Drug Gene Interaction Database)SPANXA2
DoCM (Curated mutations)SPANXA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPANXA2 (select a term)
intoGenSPANXA2
Cancer3DSPANXA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300493   
Orphanet
MedgenSPANXA2
Genetic Testing Registry SPANXA2
NextProtQ9NS26 [Medical]
TSGene728712
GENETestsSPANXA2
Huge Navigator SPANXA2 [HugePedia]
snp3D : Map Gene to Disease728712
BioCentury BCIQSPANXA2
ClinGenSPANXA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728712
Chemical/Pharm GKB GenePA37870
Clinical trialSPANXA2
Miscellaneous
canSAR (ICR)SPANXA2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPANXA2
EVEXSPANXA2
GoPubMedSPANXA2
iHOPSPANXA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:16 CET 2017

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