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SPANXA2 (SPANX family member A2)

Identity

Alias (NCBI)CT11.1
CT11.3
SPANX
SPANX-A
SPANX-C
SPANXA
SPANXC
HGNC (Hugo) SPANXA2
HGNC Previous nameSPANX
HGNC Previous nameSPANX family, member A2
LocusID (NCBI) 728712
Atlas_Id 74108
Location Xq27.2  [Link to chromosome band Xq27]
Location_base_pair Starts at 141583684 and ends at 141584738 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPANXA2   14328
Cards
Entrez_Gene (NCBI)SPANXA2    SPANX family member A2
AliasesCT11.1; CT11.3; SPANX; SPANX-A; 
SPANX-C; SPANXA; SPANXC
GeneCards (Weizmann)SPANXA2
Ensembl hg19 (Hinxton)ENSG00000203926 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203926 [Gene_View]  ENSG00000203926 [Sequence]  chrX:141583684-141584738 [Contig_View]  SPANXA2 [Vega]
ICGC DataPortalENSG00000203926
TCGA cBioPortalSPANXA2
AceView (NCBI)SPANXA2
Genatlas (Paris)SPANXA2
SOURCE (Princeton)SPANXA2
Genetics Home Reference (NIH)SPANXA2
Genomic and cartography
GoldenPath hg38 (UCSC)SPANXA2  -     chrX:141583684-141584738 -  Xq27.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPANXA2  -     Xq27.2   [Description]    (hg19-Feb_2009)
GoldenPathSPANXA2 - Xq27.2 [CytoView hg19]  SPANXA2 - Xq27.2 [CytoView hg38]
ImmunoBaseENSG00000203926
Genome Data Viewer NCBISPANXA2 [Mapview hg19]  
OMIM300493   
Gene and transcription
Genbank (Entrez)AF098306 AJ238277 AK225988 AY920732 AY920733
RefSeq transcript (Entrez)NM_145662
Consensus coding sequences : CCDS (NCBI)SPANXA2
Gene ExpressionSPANXA2 [ NCBI-GEO ]   SPANXA2 [ EBI - ARRAY_EXPRESS ]   SPANXA2 [ SEEK ]   SPANXA2 [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXA2 [ Firebrowse - Broad ]
GenevisibleExpression of SPANXA2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728712
GTEX Portal (Tissue expression)SPANXA2
Human Protein AtlasENSG00000203926-SPANXA2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NS26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NS26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NS26
PhosPhoSitePlusQ9NS26
Domains : Interpro (EBI)SPAN-X_fam   
Domain families : Pfam (Sanger)SPAN-X (PF07458)   
Domain families : Pfam (NCBI)pfam07458   
Conserved Domain (NCBI)SPANXA2
SuperfamilyQ9NS26
AlphaFold pdb e-kbQ9NS26   
Human Protein Atlas [tissue]ENSG00000203926-SPANXA2 [tissue]
HPRD06720
Protein Interaction databases
DIP (DOE-UCLA)Q9NS26
IntAct (EBI)Q9NS26
BioGRIDSPANXA2
STRING (EMBL)SPANXA2
ZODIACSPANXA2
Ontologies - Pathways
QuickGOQ9NS26
Ontology : AmiGOprotein binding  nucleus  cytoplasm  spermatogenesis  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  spermatogenesis  
NDEx NetworkSPANXA2
Atlas of Cancer Signalling NetworkSPANXA2
Wikipedia pathwaysSPANXA2
Orthology - Evolution
OrthoDB728712
GeneTree (enSembl)ENSG00000203926
Phylogenetic Trees/Animal Genes : TreeFamSPANXA2
Homologs : HomoloGeneSPANXA2
Homology/Alignments : Family Browser (UCSC)SPANXA2
Gene fusions - Rearrangements
Fusion : QuiverSPANXA2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXA2
dbVarSPANXA2
ClinVarSPANXA2
MonarchSPANXA2
1000_GenomesSPANXA2 
Exome Variant ServerSPANXA2
GNOMAD BrowserENSG00000203926
Varsome BrowserSPANXA2
ACMGSPANXA2 variants
VarityQ9NS26
Genomic Variants (DGV)SPANXA2 [DGVbeta]
DECIPHERSPANXA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPANXA2 
Mutations
ICGC Data PortalSPANXA2 
TCGA Data PortalSPANXA2 
Broad Tumor PortalSPANXA2
OASIS PortalSPANXA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPANXA2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPANXA2
Mutations and Diseases : HGMDSPANXA2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPANXA2
DgiDB (Drug Gene Interaction Database)SPANXA2
DoCM (Curated mutations)SPANXA2
CIViC (Clinical Interpretations of Variants in Cancer)SPANXA2
Cancer3DSPANXA2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300493   
Orphanet
DisGeNETSPANXA2
MedgenSPANXA2
Genetic Testing Registry SPANXA2
NextProtQ9NS26 [Medical]
GENETestsSPANXA2
Target ValidationSPANXA2
Huge Navigator SPANXA2 [HugePedia]
ClinGenSPANXA2
Clinical trials, drugs, therapy
MyCancerGenomeSPANXA2
Protein Interactions : CTDSPANXA2
Pharm GKB GenePA37870
PharosQ9NS26
Clinical trialSPANXA2
Miscellaneous
canSAR (ICR)SPANXA2
HarmonizomeSPANXA2
ARCHS4SPANXA2
DataMed IndexSPANXA2
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPANXA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:53:38 CET 2022

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