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SPANXB1 (SPANX family member B1)

Identity

Alias (NCBI)B1
CT11.2
SPANX-B
SPANXB
SPANXB2
SPANXF1
SPANXF2
HGNC (Hugo) SPANXB1
HGNC Alias symbCT11.2
HGNC Alias namecancer/testis antigen family 11, member 2
HGNC Previous nameSPANXB2
 SPANXF1
 SPANXF2
HGNC Previous nameSPANX family, member B2
 SPANX family, member F1
 SPANX family, member F2
 SPANX family, member B1
LocusID (NCBI) 728695
Atlas_Id 50648
Location Xq27.1  [Link to chromosome band Xq27]
Location_base_pair Starts at 141002594 and ends at 141003706 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPANXB1   14329
Cards
Entrez_Gene (NCBI)SPANXB1    SPANX family member B1
AliasesB1; CT11.2; SPANX-B; SPANXB; 
SPANXB2; SPANXF1; SPANXF2
GeneCards (Weizmann)SPANXB1
Ensembl hg19 (Hinxton)ENSG00000227234 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227234 [Gene_View]  ENSG00000227234 [Sequence]  chrX:141002594-141003706 [Contig_View]  SPANXB1 [Vega]
ICGC DataPortalENSG00000227234
TCGA cBioPortalSPANXB1
AceView (NCBI)SPANXB1
Genatlas (Paris)SPANXB1
SOURCE (Princeton)SPANXB1
Genetics Home Reference (NIH)SPANXB1
Genomic and cartography
GoldenPath hg38 (UCSC)SPANXB1  -     chrX:141002594-141003706 +  Xq27.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPANXB1  -     Xq27.1   [Description]    (hg19-Feb_2009)
GoldenPathSPANXB1 - Xq27.1 [CytoView hg19]  SPANXB1 - Xq27.1 [CytoView hg38]
ImmunoBaseENSG00000227234
Genome Data Viewer NCBISPANXB1 [Mapview hg19]  
OMIM300669   
Gene and transcription
Genbank (Entrez)AF098307 AJ457796 BC034472 BC137533 BC137536
RefSeq transcript (Entrez)NM_032461 NM_145664
Consensus coding sequences : CCDS (NCBI)SPANXB1
Gene ExpressionSPANXB1 [ NCBI-GEO ]   SPANXB1 [ EBI - ARRAY_EXPRESS ]   SPANXB1 [ SEEK ]   SPANXB1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXB1 [ Firebrowse - Broad ]
GenevisibleExpression of SPANXB1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728695
GTEX Portal (Tissue expression)SPANXB1
Human Protein AtlasENSG00000227234-SPANXB1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NS25   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NS25  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NS25
PhosPhoSitePlusQ9NS25
Domains : Interpro (EBI)SPAN-X_fam   
Domain families : Pfam (Sanger)SPAN-X (PF07458)   
Domain families : Pfam (NCBI)pfam07458   
Conserved Domain (NCBI)SPANXB1
SuperfamilyQ9NS25
AlphaFold pdb e-kbQ9NS25   
Human Protein Atlas [tissue]ENSG00000227234-SPANXB1 [tissue]
HPRD15423
Protein Interaction databases
DIP (DOE-UCLA)Q9NS25
IntAct (EBI)Q9NS25
BioGRIDSPANXB1
STRING (EMBL)SPANXB1
ZODIACSPANXB1
Ontologies - Pathways
QuickGOQ9NS25
Ontology : AmiGOmolecular_function  protein binding  nucleus  nucleus  cytoplasm  spermatid development  
Ontology : EGO-EBImolecular_function  protein binding  nucleus  nucleus  cytoplasm  spermatid development  
NDEx NetworkSPANXB1
Atlas of Cancer Signalling NetworkSPANXB1
Wikipedia pathwaysSPANXB1
Orthology - Evolution
OrthoDB728695
GeneTree (enSembl)ENSG00000227234
Phylogenetic Trees/Animal Genes : TreeFamSPANXB1
Homologs : HomoloGeneSPANXB1
Homology/Alignments : Family Browser (UCSC)SPANXB1
Gene fusions - Rearrangements
Fusion : QuiverSPANXB1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXB1
dbVarSPANXB1
ClinVarSPANXB1
MonarchSPANXB1
1000_GenomesSPANXB1 
Exome Variant ServerSPANXB1
GNOMAD BrowserENSG00000227234
Varsome BrowserSPANXB1
ACMGSPANXB1 variants
VarityQ9NS25
Genomic Variants (DGV)SPANXB1 [DGVbeta]
DECIPHERSPANXB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPANXB1 
Mutations
ICGC Data PortalSPANXB1 
TCGA Data PortalSPANXB1 
Broad Tumor PortalSPANXB1
OASIS PortalSPANXB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPANXB1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPANXB1
Mutations and Diseases : HGMDSPANXB1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPANXB1
DgiDB (Drug Gene Interaction Database)SPANXB1
DoCM (Curated mutations)SPANXB1
CIViC (Clinical Interpretations of Variants in Cancer)SPANXB1
Cancer3DSPANXB1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300669   
Orphanet
DisGeNETSPANXB1
MedgenSPANXB1
Genetic Testing Registry SPANXB1
NextProtQ9NS25 [Medical]
GENETestsSPANXB1
Target ValidationSPANXB1
Huge Navigator SPANXB1 [HugePedia]
ClinGenSPANXB1
Clinical trials, drugs, therapy
MyCancerGenomeSPANXB1
Protein Interactions : CTDSPANXB1
Pharm GKB GenePA37871
PharosQ9NS25
Clinical trialSPANXB1
Miscellaneous
canSAR (ICR)SPANXB1
HarmonizomeSPANXB1
ARCHS4SPANXB1
DataMed IndexSPANXB1
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPANXB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:00:25 CET 2022

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