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SPANXB1 (SPANX family member B1)

Identity

Alias_namesmember 2
SPANXB2
SPANXF1
SPANXF2
Alias_symbol (synonym)CT11.2
Other aliasB1
SPANX-B
SPANXB
HGNC (Hugo) SPANXB1
LocusID (NCBI) 728695
Atlas_Id 50648
Location Xq27.1  [Link to chromosome band Xq27]
Location_base_pair Starts at 140084756 and ends at 140085871 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPANXB1   14329
Cards
Entrez_Gene (NCBI)SPANXB1  728695  SPANX family member B1
AliasesB1; CT11.2; SPANX-B; SPANXB; 
SPANXB2; SPANXF1; SPANXF2
GeneCards (Weizmann)SPANXB1
Ensembl hg19 (Hinxton)ENSG00000227234 [Gene_View]  chrX:140084756-140085871 [Contig_View]  SPANXB1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000227234 [Gene_View]  chrX:140084756-140085871 [Contig_View]  SPANXB1 [Vega]
ICGC DataPortalENSG00000227234
TCGA cBioPortalSPANXB1
AceView (NCBI)SPANXB1
Genatlas (Paris)SPANXB1
WikiGenes728695
SOURCE (Princeton)SPANXB1
Genetics Home Reference (NIH)SPANXB1
Genomic and cartography
GoldenPath hg19 (UCSC)SPANXB1  -     chrX:140084756-140085871 +  Xq27.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPANXB1  -     Xq27.1   [Description]    (hg38-Dec_2013)
EnsemblSPANXB1 - Xq27.1 [CytoView hg19]  SPANXB1 - Xq27.1 [CytoView hg38]
Mapping of homologs : NCBISPANXB1 [Mapview hg19]  SPANXB1 [Mapview hg38]
OMIM300669   
Gene and transcription
Genbank (Entrez)AF098307 AJ457796 BC034472 BC137533 BC137536
RefSeq transcript (Entrez)NM_032461 NM_145664
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)SPANXB1
Cluster EST : UnigeneHs.711489 [ NCBI ]
CGAP (NCI)Hs.711489
Alternative Splicing GalleryENSG00000227234
Gene ExpressionSPANXB1 [ NCBI-GEO ]   SPANXB1 [ EBI - ARRAY_EXPRESS ]   SPANXB1 [ SEEK ]   SPANXB1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728695
GTEX Portal (Tissue expression)SPANXB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NS25   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NS25  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NS25
Splice isoforms : SwissVarQ9NS25
PhosPhoSitePlusQ9NS25
Domains : Interpro (EBI)SPAN-X_fam   
Domain families : Pfam (Sanger)SPAN-X (PF07458)   
Domain families : Pfam (NCBI)pfam07458   
Conserved Domain (NCBI)SPANXB1
DMDM Disease mutations728695
Blocks (Seattle)SPANXB1
SuperfamilyQ9NS25
Human Protein AtlasENSG00000227234
Peptide AtlasQ9NS25
HPRD15423
Protein Interaction databases
DIP (DOE-UCLA)Q9NS25
IntAct (EBI)Q9NS25
FunCoupENSG00000227234
BioGRIDSPANXB1
STRING (EMBL)SPANXB1
ZODIACSPANXB1
Ontologies - Pathways
QuickGOQ9NS25
Ontology : AmiGOmolecular_function  nucleus  nucleus  cytoplasm  spermatid development  
Ontology : EGO-EBImolecular_function  nucleus  nucleus  cytoplasm  spermatid development  
NDEx NetworkSPANXB1
Atlas of Cancer Signalling NetworkSPANXB1
Wikipedia pathwaysSPANXB1
Orthology - Evolution
OrthoDB728695
GeneTree (enSembl)ENSG00000227234
Phylogenetic Trees/Animal Genes : TreeFamSPANXB1
HOVERGENQ9NS25
HOGENOMQ9NS25
Homologs : HomoloGeneSPANXB1
Homology/Alignments : Family Browser (UCSC)SPANXB1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXB1
dbVarSPANXB1
ClinVarSPANXB1
1000_GenomesSPANXB1 
Exome Variant ServerSPANXB1
ExAC (Exome Aggregation Consortium)SPANXB1 (select the gene name)
Genetic variants : HAPMAP728695
Genomic Variants (DGV)SPANXB1 [DGVbeta]
DECIPHER (Syndromes)X:140084756-140085871  ENSG00000227234
CONAN: Copy Number AnalysisSPANXB1 
Mutations
ICGC Data PortalSPANXB1 
TCGA Data PortalSPANXB1 
Broad Tumor PortalSPANXB1
OASIS PortalSPANXB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPANXB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPANXB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPANXB1
DgiDB (Drug Gene Interaction Database)SPANXB1
DoCM (Curated mutations)SPANXB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPANXB1 (select a term)
intoGenSPANXB1
Cancer3DSPANXB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300669   
Orphanet
MedgenSPANXB1
Genetic Testing Registry SPANXB1
NextProtQ9NS25 [Medical]
TSGene728695
GENETestsSPANXB1
Huge Navigator SPANXB1 [HugePedia]
snp3D : Map Gene to Disease728695
BioCentury BCIQSPANXB1
ClinGenSPANXB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728695
Chemical/Pharm GKB GenePA37871
Clinical trialSPANXB1
Miscellaneous
canSAR (ICR)SPANXB1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPANXB1
EVEXSPANXB1
GoPubMedSPANXB1
iHOPSPANXB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:28:47 CET 2017

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