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SPANXC (SPANX family member C)

Identity

Alias (NCBI)CT11.3
CTp11
SPANX-C
SPANX-E
SPANXE
HGNC (Hugo) SPANXC
HGNC Alias symbCTp11
CT11.3
HGNC Alias namecancer/testis antigen family 11, member 3
HGNC Previous nameSPANX family, member C
LocusID (NCBI) 64663
Atlas_Id 42366
Location Xq27.2  [Link to chromosome band Xq27]
Location_base_pair Starts at 141241463 and ends at 141242517 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPANXC   14331
Cards
Entrez_Gene (NCBI)SPANXC    SPANX family member C
AliasesCT11.3; CTp11; SPANX-C; SPANX-E; 
SPANXE
GeneCards (Weizmann)SPANXC
Ensembl hg19 (Hinxton)ENSG00000198573 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198573 [Gene_View]  ENSG00000198573 [Sequence]  chrX:141241463-141242517 [Contig_View]  SPANXC [Vega]
ICGC DataPortalENSG00000198573
TCGA cBioPortalSPANXC
AceView (NCBI)SPANXC
Genatlas (Paris)SPANXC
SOURCE (Princeton)SPANXC
Genetics Home Reference (NIH)SPANXC
Genomic and cartography
GoldenPath hg38 (UCSC)SPANXC  -     chrX:141241463-141242517 -  Xq27.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPANXC  -     Xq27.2   [Description]    (hg19-Feb_2009)
GoldenPathSPANXC - Xq27.2 [CytoView hg19]  SPANXC - Xq27.2 [CytoView hg38]
ImmunoBaseENSG00000198573
Genome Data Viewer NCBISPANXC [Mapview hg19]  
OMIM300330   
Gene and transcription
Genbank (Entrez)AA412605 BC103960
RefSeq transcript (Entrez)NM_022661
Consensus coding sequences : CCDS (NCBI)SPANXC
Gene ExpressionSPANXC [ NCBI-GEO ]   SPANXC [ EBI - ARRAY_EXPRESS ]   SPANXC [ SEEK ]   SPANXC [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXC [ Firebrowse - Broad ]
GenevisibleExpression of SPANXC in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64663
GTEX Portal (Tissue expression)SPANXC
Human Protein AtlasENSG00000198573-SPANXC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NY87   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NY87  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NY87
PhosPhoSitePlusQ9NY87
Domains : Interpro (EBI)SPAN-X_fam   
Domain families : Pfam (Sanger)SPAN-X (PF07458)   
Domain families : Pfam (NCBI)pfam07458   
Conserved Domain (NCBI)SPANXC
SuperfamilyQ9NY87
AlphaFold pdb e-kbQ9NY87   
Human Protein Atlas [tissue]ENSG00000198573-SPANXC [tissue]
HPRD02270
Protein Interaction databases
DIP (DOE-UCLA)Q9NY87
IntAct (EBI)Q9NY87
BioGRIDSPANXC
STRING (EMBL)SPANXC
ZODIACSPANXC
Ontologies - Pathways
QuickGOQ9NY87
Ontology : AmiGOmolecular_function  protein binding  nucleus  nucleus  cytoplasm  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  nucleus  nucleus  cytoplasm  biological_process  
NDEx NetworkSPANXC
Atlas of Cancer Signalling NetworkSPANXC
Wikipedia pathwaysSPANXC
Orthology - Evolution
OrthoDB64663
GeneTree (enSembl)ENSG00000198573
Phylogenetic Trees/Animal Genes : TreeFamSPANXC
Homologs : HomoloGeneSPANXC
Homology/Alignments : Family Browser (UCSC)SPANXC
Gene fusions - Rearrangements
Fusion : QuiverSPANXC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXC
dbVarSPANXC
ClinVarSPANXC
MonarchSPANXC
1000_GenomesSPANXC 
Exome Variant ServerSPANXC
GNOMAD BrowserENSG00000198573
Varsome BrowserSPANXC
ACMGSPANXC variants
VarityQ9NY87
Genomic Variants (DGV)SPANXC [DGVbeta]
DECIPHERSPANXC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPANXC 
Mutations
ICGC Data PortalSPANXC 
TCGA Data PortalSPANXC 
Broad Tumor PortalSPANXC
OASIS PortalSPANXC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPANXC  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPANXC
Mutations and Diseases : HGMDSPANXC
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPANXC
DgiDB (Drug Gene Interaction Database)SPANXC
DoCM (Curated mutations)SPANXC
CIViC (Clinical Interpretations of Variants in Cancer)SPANXC
Cancer3DSPANXC
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300330   
Orphanet
DisGeNETSPANXC
MedgenSPANXC
Genetic Testing Registry SPANXC
NextProtQ9NY87 [Medical]
GENETestsSPANXC
Target ValidationSPANXC
Huge Navigator SPANXC [HugePedia]
ClinGenSPANXC
Clinical trials, drugs, therapy
MyCancerGenomeSPANXC
Protein Interactions : CTDSPANXC
Pharm GKB GenePA37873
PharosQ9NY87
Clinical trialSPANXC
Miscellaneous
canSAR (ICR)SPANXC
HarmonizomeSPANXC
ARCHS4SPANXC
DataMed IndexSPANXC
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPANXC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:00:25 CET 2022

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