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SPANXC (SPANX family member C)

Identity

Alias_namesmember 3
Alias_symbol (synonym)CTp11
CT11.3
Other aliasC
SPANX-C
HGNC (Hugo) SPANXC
LocusID (NCBI) 64663
Atlas_Id 42366
Location Xq27.2  [Link to chromosome band Xq27]
Location_base_pair Starts at 140785568 and ends at 140786655 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPANXC   14331
Cards
Entrez_Gene (NCBI)SPANXC  64663  SPANX family member C
AliasesC; CT11.3; CTp11; SPANX-C
GeneCards (Weizmann)SPANXC
Ensembl hg19 (Hinxton)ENSG00000198573 [Gene_View]  chrX:140785568-140786655 [Contig_View]  SPANXC [Vega]
Ensembl hg38 (Hinxton)ENSG00000198573 [Gene_View]  chrX:140785568-140786655 [Contig_View]  SPANXC [Vega]
ICGC DataPortalENSG00000198573
TCGA cBioPortalSPANXC
AceView (NCBI)SPANXC
Genatlas (Paris)SPANXC
WikiGenes64663
SOURCE (Princeton)SPANXC
Genetics Home Reference (NIH)SPANXC
Genomic and cartography
GoldenPath hg19 (UCSC)SPANXC  -     chrX:140785568-140786655 -  Xq27.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPANXC  -     Xq27.2   [Description]    (hg38-Dec_2013)
EnsemblSPANXC - Xq27.2 [CytoView hg19]  SPANXC - Xq27.2 [CytoView hg38]
Mapping of homologs : NCBISPANXC [Mapview hg19]  SPANXC [Mapview hg38]
OMIM300330   
Gene and transcription
Genbank (Entrez)AA412605 BC103960 HQ447640
RefSeq transcript (Entrez)NM_022661
RefSeq genomic (Entrez)NC_000023 NT_011786
Consensus coding sequences : CCDS (NCBI)SPANXC
Cluster EST : UnigeneHs.558533 [ NCBI ]
CGAP (NCI)Hs.558533
Alternative Splicing GalleryENSG00000198573
Gene ExpressionSPANXC [ NCBI-GEO ]   SPANXC [ EBI - ARRAY_EXPRESS ]   SPANXC [ SEEK ]   SPANXC [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64663
GTEX Portal (Tissue expression)SPANXC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NY87   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NY87  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NY87
Splice isoforms : SwissVarQ9NY87
PhosPhoSitePlusQ9NY87
Domains : Interpro (EBI)SPAN-X_fam   
Domain families : Pfam (Sanger)SPAN-X (PF07458)   
Domain families : Pfam (NCBI)pfam07458   
Conserved Domain (NCBI)SPANXC
DMDM Disease mutations64663
Blocks (Seattle)SPANXC
SuperfamilyQ9NY87
Human Protein AtlasENSG00000198573
Peptide AtlasQ9NY87
HPRD02270
IPIIPI00006961   IPI00940711   
Protein Interaction databases
DIP (DOE-UCLA)Q9NY87
IntAct (EBI)Q9NY87
FunCoupENSG00000198573
BioGRIDSPANXC
STRING (EMBL)SPANXC
ZODIACSPANXC
Ontologies - Pathways
QuickGOQ9NY87
Ontology : AmiGOmolecular_function  protein binding  nucleus  nucleus  cytoplasm  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  nucleus  nucleus  cytoplasm  biological_process  
NDEx NetworkSPANXC
Atlas of Cancer Signalling NetworkSPANXC
Wikipedia pathwaysSPANXC
Orthology - Evolution
OrthoDB64663
GeneTree (enSembl)ENSG00000198573
Phylogenetic Trees/Animal Genes : TreeFamSPANXC
HOVERGENQ9NY87
HOGENOMQ9NY87
Homologs : HomoloGeneSPANXC
Homology/Alignments : Family Browser (UCSC)SPANXC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXC
dbVarSPANXC
ClinVarSPANXC
1000_GenomesSPANXC 
Exome Variant ServerSPANXC
ExAC (Exome Aggregation Consortium)SPANXC (select the gene name)
Genetic variants : HAPMAP64663
Genomic Variants (DGV)SPANXC [DGVbeta]
DECIPHER (Syndromes)X:140785568-140786655  ENSG00000198573
CONAN: Copy Number AnalysisSPANXC 
Mutations
ICGC Data PortalSPANXC 
TCGA Data PortalSPANXC 
Broad Tumor PortalSPANXC
OASIS PortalSPANXC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPANXC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPANXC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPANXC
DgiDB (Drug Gene Interaction Database)SPANXC
DoCM (Curated mutations)SPANXC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPANXC (select a term)
intoGenSPANXC
Cancer3DSPANXC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300330   
Orphanet
MedgenSPANXC
Genetic Testing Registry SPANXC
NextProtQ9NY87 [Medical]
TSGene64663
GENETestsSPANXC
Huge Navigator SPANXC [HugePedia]
snp3D : Map Gene to Disease64663
BioCentury BCIQSPANXC
ClinGenSPANXC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64663
Chemical/Pharm GKB GenePA37873
Clinical trialSPANXC
Miscellaneous
canSAR (ICR)SPANXC (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPANXC
EVEXSPANXC
GoPubMedSPANXC
iHOPSPANXC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:28:47 CET 2017

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