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SPANXD (SPANX family member D)

Identity

Alias (NCBI)CT11.3
CT11.4
SPANX-C
SPANX-D
SPANX-E
SPANXC
SPANXE
dJ171K16.1
HGNC (Hugo) SPANXD
HGNC Alias symbCT11.4
HGNC Alias namecancer/testis antigen family 11, member 4
HGNC Previous nameSPANXE
HGNC Previous nameSPANX family, member E
 SPANX family, member D
LocusID (NCBI) 64648
Atlas_Id 42367
Location Xq27.2  [Link to chromosome band Xq27]
Location_base_pair Starts at 141697411 and ends at 141698739 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPANXD   14332
Cards
Entrez_Gene (NCBI)SPANXD    SPANX family member D
AliasesCT11.3; CT11.4; SPANX-C; SPANX-D; 
SPANX-E; SPANXC; SPANXE; dJ171K16.1
GeneCards (Weizmann)SPANXD
Ensembl hg19 (Hinxton)ENSG00000196406 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196406 [Gene_View]  ENSG00000196406 [Sequence]  chrX:141697411-141698739 [Contig_View]  SPANXD [Vega]
ICGC DataPortalENSG00000196406
TCGA cBioPortalSPANXD
AceView (NCBI)SPANXD
Genatlas (Paris)SPANXD
SOURCE (Princeton)SPANXD
Genetics Home Reference (NIH)SPANXD
Genomic and cartography
GoldenPath hg38 (UCSC)SPANXD  -     chrX:141697411-141698739 -  Xq27.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPANXD  -     Xq27.2   [Description]    (hg19-Feb_2009)
GoldenPathSPANXD - Xq27.2 [CytoView hg19]  SPANXD - Xq27.2 [CytoView hg38]
ImmunoBaseENSG00000196406
Genome Data Viewer NCBISPANXD [Mapview hg19]  
OMIM300670   
Gene and transcription
Genbank (Entrez)AF312765 AI808260 AJ457795 AY920734 AY920740
RefSeq transcript (Entrez)NM_032417
Consensus coding sequences : CCDS (NCBI)SPANXD
Gene ExpressionSPANXD [ NCBI-GEO ]   SPANXD [ EBI - ARRAY_EXPRESS ]   SPANXD [ SEEK ]   SPANXD [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXD [ Firebrowse - Broad ]
GenevisibleExpression of SPANXD in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64648
GTEX Portal (Tissue expression)SPANXD
Human Protein AtlasENSG00000196406-SPANXD [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXN6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXN6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXN6
PhosPhoSitePlusQ9BXN6
Domains : Interpro (EBI)SPAN-X_fam   
Domain families : Pfam (Sanger)SPAN-X (PF07458)   
Domain families : Pfam (NCBI)pfam07458   
Conserved Domain (NCBI)SPANXD
SuperfamilyQ9BXN6
AlphaFold pdb e-kbQ9BXN6   
Human Protein Atlas [tissue]ENSG00000196406-SPANXD [tissue]
HPRD06722
Protein Interaction databases
DIP (DOE-UCLA)Q9BXN6
IntAct (EBI)Q9BXN6
BioGRIDSPANXD
STRING (EMBL)SPANXD
ZODIACSPANXD
Ontologies - Pathways
QuickGOQ9BXN6
Ontology : AmiGOprotein binding  nucleus  cytoplasm  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  
NDEx NetworkSPANXD
Atlas of Cancer Signalling NetworkSPANXD
Wikipedia pathwaysSPANXD
Orthology - Evolution
OrthoDB64648
GeneTree (enSembl)ENSG00000196406
Phylogenetic Trees/Animal Genes : TreeFamSPANXD
Homologs : HomoloGeneSPANXD
Homology/Alignments : Family Browser (UCSC)SPANXD
Gene fusions - Rearrangements
Fusion : QuiverSPANXD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXD
dbVarSPANXD
ClinVarSPANXD
MonarchSPANXD
1000_GenomesSPANXD 
Exome Variant ServerSPANXD
GNOMAD BrowserENSG00000196406
Varsome BrowserSPANXD
ACMGSPANXD variants
VarityQ9BXN6
Genomic Variants (DGV)SPANXD [DGVbeta]
DECIPHERSPANXD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPANXD 
Mutations
ICGC Data PortalSPANXD 
TCGA Data PortalSPANXD 
Broad Tumor PortalSPANXD
OASIS PortalSPANXD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPANXD  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPANXD
Mutations and Diseases : HGMDSPANXD
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPANXD
DgiDB (Drug Gene Interaction Database)SPANXD
DoCM (Curated mutations)SPANXD
CIViC (Clinical Interpretations of Variants in Cancer)SPANXD
Cancer3DSPANXD
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300670   
Orphanet
DisGeNETSPANXD
MedgenSPANXD
Genetic Testing Registry SPANXD
NextProtQ9BXN6 [Medical]
GENETestsSPANXD
Target ValidationSPANXD
Huge Navigator SPANXD [HugePedia]
ClinGenSPANXD
Clinical trials, drugs, therapy
MyCancerGenomeSPANXD
Protein Interactions : CTDSPANXD
Pharm GKB GenePA37874
PharosQ9BXN6
Clinical trialSPANXD
Miscellaneous
canSAR (ICR)SPANXD
HarmonizomeSPANXD
ARCHS4SPANXD
DataMed IndexSPANXD
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPANXD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:00:25 CET 2022

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