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SPANXD (SPANX family member D)

Identity

Alias_namesmember 4
SPANXE
Alias_symbol (synonym)CT11.4
Other aliasSPANX-C
SPANX-D
SPANX-E
dJ171K16.1
HGNC (Hugo) SPANXD
LocusID (NCBI) 64648
Atlas_Id 42367
Location Xq27.2  [Link to chromosome band Xq27]
Location_base_pair Starts at 140785558 and ends at 140786896 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPANXD   14332
Cards
Entrez_Gene (NCBI)SPANXD  64648  SPANX family member D
AliasesCT11.4; SPANX-C; SPANX-D; SPANX-E; 
SPANXE; dJ171K16.1
GeneCards (Weizmann)SPANXD
Ensembl hg19 (Hinxton)ENSG00000196406 [Gene_View]  chrX:140785558-140786896 [Contig_View]  SPANXD [Vega]
Ensembl hg38 (Hinxton)ENSG00000196406 [Gene_View]  chrX:140785558-140786896 [Contig_View]  SPANXD [Vega]
ICGC DataPortalENSG00000196406
TCGA cBioPortalSPANXD
AceView (NCBI)SPANXD
Genatlas (Paris)SPANXD
WikiGenes64648
SOURCE (Princeton)SPANXD
Genetics Home Reference (NIH)SPANXD
Genomic and cartography
GoldenPath hg19 (UCSC)SPANXD  -     chrX:140785558-140786896 -  Xq27.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPANXD  -     Xq27.2   [Description]    (hg38-Dec_2013)
EnsemblSPANXD - Xq27.2 [CytoView hg19]  SPANXD - Xq27.2 [CytoView hg38]
Mapping of homologs : NCBISPANXD [Mapview hg19]  SPANXD [Mapview hg38]
OMIM300670   300671   
Gene and transcription
Genbank (Entrez)AF312765 AI808260 AJ457795 AY920734 AY920740
RefSeq transcript (Entrez)NM_032417
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)SPANXD
Cluster EST : UnigeneHs.375036 [ NCBI ]
CGAP (NCI)Hs.375036
Alternative Splicing GalleryENSG00000196406
Gene ExpressionSPANXD [ NCBI-GEO ]   SPANXD [ EBI - ARRAY_EXPRESS ]   SPANXD [ SEEK ]   SPANXD [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64648
GTEX Portal (Tissue expression)SPANXD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXN6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXN6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXN6
Splice isoforms : SwissVarQ9BXN6
PhosPhoSitePlusQ9BXN6
Domains : Interpro (EBI)SPAN-X_fam   
Domain families : Pfam (Sanger)SPAN-X (PF07458)   
Domain families : Pfam (NCBI)pfam07458   
Conserved Domain (NCBI)SPANXD
DMDM Disease mutations64648
Blocks (Seattle)SPANXD
SuperfamilyQ9BXN6
Human Protein AtlasENSG00000196406
Peptide AtlasQ9BXN6
HPRD06722
IPIIPI00031795   IPI00929591   IPI01018906   IPI01018814   IPI01018623   IPI01018758   IPI01018847   IPI01026029   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXN6
IntAct (EBI)Q9BXN6
FunCoupENSG00000196406
BioGRIDSPANXD
STRING (EMBL)SPANXD
ZODIACSPANXD
Ontologies - Pathways
QuickGOQ9BXN6
Ontology : AmiGOprotein binding  nucleus  cytoplasm  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  
NDEx NetworkSPANXD
Atlas of Cancer Signalling NetworkSPANXD
Wikipedia pathwaysSPANXD
Orthology - Evolution
OrthoDB64648
GeneTree (enSembl)ENSG00000196406
Phylogenetic Trees/Animal Genes : TreeFamSPANXD
HOVERGENQ9BXN6
HOGENOMQ9BXN6
Homologs : HomoloGeneSPANXD
Homology/Alignments : Family Browser (UCSC)SPANXD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXD
dbVarSPANXD
ClinVarSPANXD
1000_GenomesSPANXD 
Exome Variant ServerSPANXD
ExAC (Exome Aggregation Consortium)SPANXD (select the gene name)
Genetic variants : HAPMAP64648
Genomic Variants (DGV)SPANXD [DGVbeta]
DECIPHER (Syndromes)X:140785558-140786896  ENSG00000196406
CONAN: Copy Number AnalysisSPANXD 
Mutations
ICGC Data PortalSPANXD 
TCGA Data PortalSPANXD 
Broad Tumor PortalSPANXD
OASIS PortalSPANXD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPANXD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPANXD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPANXD
DgiDB (Drug Gene Interaction Database)SPANXD
DoCM (Curated mutations)SPANXD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPANXD (select a term)
intoGenSPANXD
Cancer3DSPANXD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300670    300671   
Orphanet
MedgenSPANXD
Genetic Testing Registry SPANXD
NextProtQ9BXN6 [Medical]
TSGene64648
GENETestsSPANXD
Huge Navigator SPANXD [HugePedia]
snp3D : Map Gene to Disease64648
BioCentury BCIQSPANXD
ClinGenSPANXD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64648
Chemical/Pharm GKB GenePA37874
Clinical trialSPANXD
Miscellaneous
canSAR (ICR)SPANXD (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPANXD
EVEXSPANXD
GoPubMedSPANXD
iHOPSPANXD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:20:32 CEST 2017

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