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SPANXN1 (SPANX family member N1)

Identity

Alias (NCBI)CT11.6
HGNC (Hugo) SPANXN1
HGNC Alias symbSPANX-N1
CT11.6
HGNC Alias namecancer/testis antigen family 11, member 6
HGNC Previous nameSPANX family, member N1
LocusID (NCBI) 494118
Atlas_Id 46833
Location Xq27.3  [Link to chromosome band Xq27]
Location_base_pair Starts at 145247503 and ends at 145256208 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPANXN1   33174
Cards
Entrez_Gene (NCBI)SPANXN1    SPANX family member N1
AliasesCT11.6
GeneCards (Weizmann)SPANXN1
Ensembl hg19 (Hinxton)ENSG00000203923 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203923 [Gene_View]  ENSG00000203923 [Sequence]  chrX:145247503-145256208 [Contig_View]  SPANXN1 [Vega]
ICGC DataPortalENSG00000203923
TCGA cBioPortalSPANXN1
AceView (NCBI)SPANXN1
Genatlas (Paris)SPANXN1
SOURCE (Princeton)SPANXN1
Genetics Home Reference (NIH)SPANXN1
Genomic and cartography
GoldenPath hg38 (UCSC)SPANXN1  -     chrX:145247503-145256208 +  Xq27.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPANXN1  -     Xq27.3   [Description]    (hg19-Feb_2009)
GoldenPathSPANXN1 - Xq27.3 [CytoView hg19]  SPANXN1 - Xq27.3 [CytoView hg38]
ImmunoBaseENSG00000203923
Genome Data Viewer NCBISPANXN1 [Mapview hg19]  
OMIM300664   
Gene and transcription
Genbank (Entrez)DQ336118 DQ336119 DQ336120 DQ336121
RefSeq transcript (Entrez)NM_001009614
Consensus coding sequences : CCDS (NCBI)SPANXN1
Gene ExpressionSPANXN1 [ NCBI-GEO ]   SPANXN1 [ EBI - ARRAY_EXPRESS ]   SPANXN1 [ SEEK ]   SPANXN1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXN1 [ Firebrowse - Broad ]
GenevisibleExpression of SPANXN1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)494118
GTEX Portal (Tissue expression)SPANXN1
Human Protein AtlasENSG00000203923-SPANXN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VSR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VSR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VSR9
PhosPhoSitePlusQ5VSR9
Domains : Interpro (EBI)SPAN-X_fam   
Domain families : Pfam (Sanger)SPAN-X (PF07458)   
Domain families : Pfam (NCBI)pfam07458   
Conserved Domain (NCBI)SPANXN1
SuperfamilyQ5VSR9
AlphaFold pdb e-kbQ5VSR9   
Human Protein Atlas [tissue]ENSG00000203923-SPANXN1 [tissue]
HPRD18090
Protein Interaction databases
DIP (DOE-UCLA)Q5VSR9
IntAct (EBI)Q5VSR9
BioGRIDSPANXN1
STRING (EMBL)SPANXN1
ZODIACSPANXN1
Ontologies - Pathways
QuickGOQ5VSR9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSPANXN1
Atlas of Cancer Signalling NetworkSPANXN1
Wikipedia pathwaysSPANXN1
Orthology - Evolution
OrthoDB494118
GeneTree (enSembl)ENSG00000203923
Phylogenetic Trees/Animal Genes : TreeFamSPANXN1
Homologs : HomoloGeneSPANXN1
Homology/Alignments : Family Browser (UCSC)SPANXN1
Gene fusions - Rearrangements
Fusion : QuiverSPANXN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXN1
dbVarSPANXN1
ClinVarSPANXN1
MonarchSPANXN1
1000_GenomesSPANXN1 
Exome Variant ServerSPANXN1
GNOMAD BrowserENSG00000203923
Varsome BrowserSPANXN1
ACMGSPANXN1 variants
VarityQ5VSR9
Genomic Variants (DGV)SPANXN1 [DGVbeta]
DECIPHERSPANXN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPANXN1 
Mutations
ICGC Data PortalSPANXN1 
TCGA Data PortalSPANXN1 
Broad Tumor PortalSPANXN1
OASIS PortalSPANXN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPANXN1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPANXN1
Mutations and Diseases : HGMDSPANXN1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPANXN1
DgiDB (Drug Gene Interaction Database)SPANXN1
DoCM (Curated mutations)SPANXN1
CIViC (Clinical Interpretations of Variants in Cancer)SPANXN1
Cancer3DSPANXN1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300664   
Orphanet
DisGeNETSPANXN1
MedgenSPANXN1
Genetic Testing Registry SPANXN1
NextProtQ5VSR9 [Medical]
GENETestsSPANXN1
Target ValidationSPANXN1
Huge Navigator SPANXN1 [HugePedia]
ClinGenSPANXN1
Clinical trials, drugs, therapy
MyCancerGenomeSPANXN1
Protein Interactions : CTDSPANXN1
Pharm GKB GenePA162404376
PharosQ5VSR9
Clinical trialSPANXN1
Miscellaneous
canSAR (ICR)SPANXN1
HarmonizomeSPANXN1
ARCHS4SPANXN1
DataMed IndexSPANXN1
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPANXN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:00:25 CET 2022

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