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SPANXN1 (SPANX family member N1)

Identity

Alias_namesmember 6
Alias_symbol (synonym)SPANX-N1
CT11.6
Other alias
HGNC (Hugo) SPANXN1
LocusID (NCBI) 494118
Atlas_Id 46833
Location Xq27.3  [Link to chromosome band Xq27]
Location_base_pair Starts at 145247587 and ends at 145256208 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPANXN1   33174
Cards
Entrez_Gene (NCBI)SPANXN1  494118  SPANX family member N1
AliasesCT11.6
GeneCards (Weizmann)SPANXN1
Ensembl hg19 (Hinxton)ENSG00000203923 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203923 [Gene_View]  chrX:145247587-145256208 [Contig_View]  SPANXN1 [Vega]
ICGC DataPortalENSG00000203923
TCGA cBioPortalSPANXN1
AceView (NCBI)SPANXN1
Genatlas (Paris)SPANXN1
WikiGenes494118
SOURCE (Princeton)SPANXN1
Genetics Home Reference (NIH)SPANXN1
Genomic and cartography
GoldenPath hg38 (UCSC)SPANXN1  -     chrX:145247587-145256208 +  Xq27.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPANXN1  -     Xq27.3   [Description]    (hg19-Feb_2009)
EnsemblSPANXN1 - Xq27.3 [CytoView hg19]  SPANXN1 - Xq27.3 [CytoView hg38]
Mapping of homologs : NCBISPANXN1 [Mapview hg19]  SPANXN1 [Mapview hg38]
OMIM300664   
Gene and transcription
Genbank (Entrez)DQ336118 DQ336119 DQ336120 DQ336121
RefSeq transcript (Entrez)NM_001009614
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPANXN1
Cluster EST : UnigeneHs.551270 [ NCBI ]
CGAP (NCI)Hs.551270
Alternative Splicing GalleryENSG00000203923
Gene ExpressionSPANXN1 [ NCBI-GEO ]   SPANXN1 [ EBI - ARRAY_EXPRESS ]   SPANXN1 [ SEEK ]   SPANXN1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)494118
GTEX Portal (Tissue expression)SPANXN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VSR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VSR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VSR9
Splice isoforms : SwissVarQ5VSR9
PhosPhoSitePlusQ5VSR9
Domains : Interpro (EBI)SPAN-X_fam   
Domain families : Pfam (Sanger)SPAN-X (PF07458)   
Domain families : Pfam (NCBI)pfam07458   
Conserved Domain (NCBI)SPANXN1
DMDM Disease mutations494118
Blocks (Seattle)SPANXN1
SuperfamilyQ5VSR9
Human Protein AtlasENSG00000203923
Peptide AtlasQ5VSR9
HPRD18090
IPIIPI00480094   
Protein Interaction databases
DIP (DOE-UCLA)Q5VSR9
IntAct (EBI)Q5VSR9
FunCoupENSG00000203923
BioGRIDSPANXN1
STRING (EMBL)SPANXN1
ZODIACSPANXN1
Ontologies - Pathways
QuickGOQ5VSR9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSPANXN1
Atlas of Cancer Signalling NetworkSPANXN1
Wikipedia pathwaysSPANXN1
Orthology - Evolution
OrthoDB494118
GeneTree (enSembl)ENSG00000203923
Phylogenetic Trees/Animal Genes : TreeFamSPANXN1
HOVERGENQ5VSR9
HOGENOMQ5VSR9
Homologs : HomoloGeneSPANXN1
Homology/Alignments : Family Browser (UCSC)SPANXN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXN1
dbVarSPANXN1
ClinVarSPANXN1
1000_GenomesSPANXN1 
Exome Variant ServerSPANXN1
ExAC (Exome Aggregation Consortium)SPANXN1 (select the gene name)
Genetic variants : HAPMAP494118
Genomic Variants (DGV)SPANXN1 [DGVbeta]
DECIPHERSPANXN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPANXN1 
Mutations
ICGC Data PortalSPANXN1 
TCGA Data PortalSPANXN1 
Broad Tumor PortalSPANXN1
OASIS PortalSPANXN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPANXN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPANXN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SPANXN1
DgiDB (Drug Gene Interaction Database)SPANXN1
DoCM (Curated mutations)SPANXN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPANXN1 (select a term)
intoGenSPANXN1
Cancer3DSPANXN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300664   
Orphanet
MedgenSPANXN1
Genetic Testing Registry SPANXN1
NextProtQ5VSR9 [Medical]
TSGene494118
GENETestsSPANXN1
Target ValidationSPANXN1
Huge Navigator SPANXN1 [HugePedia]
snp3D : Map Gene to Disease494118
BioCentury BCIQSPANXN1
ClinGenSPANXN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD494118
Chemical/Pharm GKB GenePA162404376
Clinical trialSPANXN1
Miscellaneous
canSAR (ICR)SPANXN1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPANXN1
EVEXSPANXN1
GoPubMedSPANXN1
iHOPSPANXN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:57:03 CEST 2017

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