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SPANXN2 (SPANX family member N2)

Identity

Alias_namesSPANX family, member N2
Alias_symbol (synonym)SPANX-N2
CT11.7
Other alias
HGNC (Hugo) SPANXN2
LocusID (NCBI) 494119
Atlas_Id 74110
Location Xq27.3  [Link to chromosome band Xq27]
Location_base_pair Starts at 143712035 and ends at 143720668 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPANXN2   33175
Cards
Entrez_Gene (NCBI)SPANXN2  494119  SPANX family member N2
AliasesCT11.7; SPANX-N2
GeneCards (Weizmann)SPANXN2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:143712035-143720668 [Contig_View]  SPANXN2 [Vega]
TCGA cBioPortalSPANXN2
AceView (NCBI)SPANXN2
Genatlas (Paris)SPANXN2
WikiGenes494119
SOURCE (Princeton)SPANXN2
Genetics Home Reference (NIH)SPANXN2
Genomic and cartography
GoldenPath hg38 (UCSC)SPANXN2  -     chrX:143712035-143720668 -  Xq27.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPANXN2  -     Xq27.3   [Description]    (hg19-Feb_2009)
EnsemblSPANXN2 - Xq27.3 [CytoView hg19]  SPANXN2 - Xq27.3 [CytoView hg38]
Mapping of homologs : NCBISPANXN2 [Mapview hg19]  SPANXN2 [Mapview hg38]
OMIM300665   
Gene and transcription
Genbank (Entrez)BC146378 BC146546 DQ336111 DQ336112 DQ336113
RefSeq transcript (Entrez)NM_001009615
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPANXN2
Gene ExpressionSPANXN2 [ NCBI-GEO ]   SPANXN2 [ EBI - ARRAY_EXPRESS ]   SPANXN2 [ SEEK ]   SPANXN2 [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)494119
GTEX Portal (Tissue expression)SPANXN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5MJ10   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5MJ10  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5MJ10
Splice isoforms : SwissVarQ5MJ10
PhosPhoSitePlusQ5MJ10
Domains : Interpro (EBI)SPAN-X_fam   
Domain families : Pfam (Sanger)SPAN-X (PF07458)   
Domain families : Pfam (NCBI)pfam07458   
Conserved Domain (NCBI)SPANXN2
DMDM Disease mutations494119
Blocks (Seattle)SPANXN2
SuperfamilyQ5MJ10
Peptide AtlasQ5MJ10
HPRD18091
IPIIPI00412393   
Protein Interaction databases
DIP (DOE-UCLA)Q5MJ10
IntAct (EBI)Q5MJ10
BioGRIDSPANXN2
STRING (EMBL)SPANXN2
ZODIACSPANXN2
Ontologies - Pathways
QuickGOQ5MJ10
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSPANXN2
Atlas of Cancer Signalling NetworkSPANXN2
Wikipedia pathwaysSPANXN2
Orthology - Evolution
OrthoDB494119
Phylogenetic Trees/Animal Genes : TreeFamSPANXN2
HOVERGENQ5MJ10
HOGENOMQ5MJ10
Homologs : HomoloGeneSPANXN2
Homology/Alignments : Family Browser (UCSC)SPANXN2
Gene fusions - Rearrangements
Fusion: Tumor Portal SPANXN2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXN2
dbVarSPANXN2
ClinVarSPANXN2
1000_GenomesSPANXN2 
Exome Variant ServerSPANXN2
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP494119
Genomic Variants (DGV)SPANXN2 [DGVbeta]
DECIPHERSPANXN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPANXN2 
Mutations
ICGC Data PortalSPANXN2 
TCGA Data PortalSPANXN2 
Broad Tumor PortalSPANXN2
OASIS PortalSPANXN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPANXN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPANXN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPANXN2
DgiDB (Drug Gene Interaction Database)SPANXN2
DoCM (Curated mutations)SPANXN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPANXN2 (select a term)
intoGenSPANXN2
Cancer3DSPANXN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300665   
Orphanet
MedgenSPANXN2
Genetic Testing Registry SPANXN2
NextProtQ5MJ10 [Medical]
TSGene494119
GENETestsSPANXN2
Target ValidationSPANXN2
Huge Navigator SPANXN2 [HugePedia]
snp3D : Map Gene to Disease494119
BioCentury BCIQSPANXN2
ClinGenSPANXN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD494119
Chemical/Pharm GKB GenePA162404384
Clinical trialSPANXN2
Miscellaneous
canSAR (ICR)SPANXN2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPANXN2
EVEXSPANXN2
GoPubMedSPANXN2
iHOPSPANXN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:30:35 CET 2017

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