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SPANXN3 (SPANX family member N3)

Identity

Alias_namesSPANX family, member N3
Alias_symbol (synonym)SPANX-N3
CT11.8
Other alias
HGNC (Hugo) SPANXN3
LocusID (NCBI) 139067
Atlas_Id 74111
Location Xq27.3  [Link to chromosome band Xq27]
Location_base_pair Starts at 143508735 and ends at 143517475 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPANXN3   33176
Cards
Entrez_Gene (NCBI)SPANXN3  139067  SPANX family member N3
AliasesCT11.8; SPANX-N3
GeneCards (Weizmann)SPANXN3
Ensembl hg19 (Hinxton)ENSG00000189252 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189252 [Gene_View]  chrX:143508735-143517475 [Contig_View]  SPANXN3 [Vega]
ICGC DataPortalENSG00000189252
TCGA cBioPortalSPANXN3
AceView (NCBI)SPANXN3
Genatlas (Paris)SPANXN3
WikiGenes139067
SOURCE (Princeton)SPANXN3
Genetics Home Reference (NIH)SPANXN3
Genomic and cartography
GoldenPath hg38 (UCSC)SPANXN3  -     chrX:143508735-143517475 -  Xq27.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPANXN3  -     Xq27.3   [Description]    (hg19-Feb_2009)
EnsemblSPANXN3 - Xq27.3 [CytoView hg19]  SPANXN3 - Xq27.3 [CytoView hg38]
Mapping of homologs : NCBISPANXN3 [Mapview hg19]  SPANXN3 [Mapview hg38]
OMIM300666   
Gene and transcription
Genbank (Entrez)BC062750 DQ336128 DQ336129
RefSeq transcript (Entrez)NM_001009609
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPANXN3
Cluster EST : UnigeneHs.447320 [ NCBI ]
CGAP (NCI)Hs.447320
Alternative Splicing GalleryENSG00000189252
Gene ExpressionSPANXN3 [ NCBI-GEO ]   SPANXN3 [ EBI - ARRAY_EXPRESS ]   SPANXN3 [ SEEK ]   SPANXN3 [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139067
GTEX Portal (Tissue expression)SPANXN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5MJ09   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5MJ09  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5MJ09
Splice isoforms : SwissVarQ5MJ09
PhosPhoSitePlusQ5MJ09
Domains : Interpro (EBI)SPAN-X_fam   
Domain families : Pfam (Sanger)SPAN-X (PF07458)   
Domain families : Pfam (NCBI)pfam07458   
Conserved Domain (NCBI)SPANXN3
DMDM Disease mutations139067
Blocks (Seattle)SPANXN3
SuperfamilyQ5MJ09
Human Protein AtlasENSG00000189252
Peptide AtlasQ5MJ09
HPRD18092
IPIIPI00046129   
Protein Interaction databases
DIP (DOE-UCLA)Q5MJ09
IntAct (EBI)Q5MJ09
FunCoupENSG00000189252
BioGRIDSPANXN3
STRING (EMBL)SPANXN3
ZODIACSPANXN3
Ontologies - Pathways
QuickGOQ5MJ09
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSPANXN3
Atlas of Cancer Signalling NetworkSPANXN3
Wikipedia pathwaysSPANXN3
Orthology - Evolution
OrthoDB139067
GeneTree (enSembl)ENSG00000189252
Phylogenetic Trees/Animal Genes : TreeFamSPANXN3
HOVERGENQ5MJ09
HOGENOMQ5MJ09
Homologs : HomoloGeneSPANXN3
Homology/Alignments : Family Browser (UCSC)SPANXN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXN3
dbVarSPANXN3
ClinVarSPANXN3
1000_GenomesSPANXN3 
Exome Variant ServerSPANXN3
ExAC (Exome Aggregation Consortium)SPANXN3 (select the gene name)
Genetic variants : HAPMAP139067
Genomic Variants (DGV)SPANXN3 [DGVbeta]
DECIPHERSPANXN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPANXN3 
Mutations
ICGC Data PortalSPANXN3 
TCGA Data PortalSPANXN3 
Broad Tumor PortalSPANXN3
OASIS PortalSPANXN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPANXN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPANXN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPANXN3
DgiDB (Drug Gene Interaction Database)SPANXN3
DoCM (Curated mutations)SPANXN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPANXN3 (select a term)
intoGenSPANXN3
Cancer3DSPANXN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300666   
Orphanet
MedgenSPANXN3
Genetic Testing Registry SPANXN3
NextProtQ5MJ09 [Medical]
TSGene139067
GENETestsSPANXN3
Target ValidationSPANXN3
Huge Navigator SPANXN3 [HugePedia]
snp3D : Map Gene to Disease139067
BioCentury BCIQSPANXN3
ClinGenSPANXN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139067
Chemical/Pharm GKB GenePA162404385
Clinical trialSPANXN3
Miscellaneous
canSAR (ICR)SPANXN3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPANXN3
EVEXSPANXN3
GoPubMedSPANXN3
iHOPSPANXN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:11 CEST 2017

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