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SPANXN3 (SPANX family member N3)

Identity

Alias (NCBI)CT11.8
SPANX-N3
HGNC (Hugo) SPANXN3
HGNC Alias symbSPANX-N3
CT11.8
HGNC Alias namecancer/testis antigen family 11, member 8
HGNC Previous nameSPANX family, member N3
LocusID (NCBI) 139067
Atlas_Id 74111
Location Xq27.3  [Link to chromosome band Xq27]
Location_base_pair Starts at 143508735 and ends at 143517475 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPANXN3   33176
Cards
Entrez_Gene (NCBI)SPANXN3    SPANX family member N3
AliasesCT11.8; SPANX-N3
GeneCards (Weizmann)SPANXN3
Ensembl hg19 (Hinxton)ENSG00000189252 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189252 [Gene_View]  ENSG00000189252 [Sequence]  chrX:143508735-143517475 [Contig_View]  SPANXN3 [Vega]
ICGC DataPortalENSG00000189252
TCGA cBioPortalSPANXN3
AceView (NCBI)SPANXN3
Genatlas (Paris)SPANXN3
SOURCE (Princeton)SPANXN3
Genetics Home Reference (NIH)SPANXN3
Genomic and cartography
GoldenPath hg38 (UCSC)SPANXN3  -     chrX:143508735-143517475 -  Xq27.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPANXN3  -     Xq27.3   [Description]    (hg19-Feb_2009)
GoldenPathSPANXN3 - Xq27.3 [CytoView hg19]  SPANXN3 - Xq27.3 [CytoView hg38]
ImmunoBaseENSG00000189252
Genome Data Viewer NCBISPANXN3 [Mapview hg19]  
OMIM300666   
Gene and transcription
Genbank (Entrez)BC062750 DQ336128 DQ336129
RefSeq transcript (Entrez)NM_001009609
Consensus coding sequences : CCDS (NCBI)SPANXN3
Gene ExpressionSPANXN3 [ NCBI-GEO ]   SPANXN3 [ EBI - ARRAY_EXPRESS ]   SPANXN3 [ SEEK ]   SPANXN3 [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXN3 [ Firebrowse - Broad ]
GenevisibleExpression of SPANXN3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139067
GTEX Portal (Tissue expression)SPANXN3
Human Protein AtlasENSG00000189252-SPANXN3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5MJ09   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5MJ09  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5MJ09
PhosPhoSitePlusQ5MJ09
Domains : Interpro (EBI)SPAN-X_fam   
Domain families : Pfam (Sanger)SPAN-X (PF07458)   
Domain families : Pfam (NCBI)pfam07458   
Conserved Domain (NCBI)SPANXN3
SuperfamilyQ5MJ09
AlphaFold pdb e-kbQ5MJ09   
Human Protein Atlas [tissue]ENSG00000189252-SPANXN3 [tissue]
HPRD18092
Protein Interaction databases
DIP (DOE-UCLA)Q5MJ09
IntAct (EBI)Q5MJ09
BioGRIDSPANXN3
STRING (EMBL)SPANXN3
ZODIACSPANXN3
Ontologies - Pathways
QuickGOQ5MJ09
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkSPANXN3
Atlas of Cancer Signalling NetworkSPANXN3
Wikipedia pathwaysSPANXN3
Orthology - Evolution
OrthoDB139067
GeneTree (enSembl)ENSG00000189252
Phylogenetic Trees/Animal Genes : TreeFamSPANXN3
Homologs : HomoloGeneSPANXN3
Homology/Alignments : Family Browser (UCSC)SPANXN3
Gene fusions - Rearrangements
Fusion : QuiverSPANXN3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXN3
dbVarSPANXN3
ClinVarSPANXN3
MonarchSPANXN3
1000_GenomesSPANXN3 
Exome Variant ServerSPANXN3
GNOMAD BrowserENSG00000189252
Varsome BrowserSPANXN3
ACMGSPANXN3 variants
VarityQ5MJ09
Genomic Variants (DGV)SPANXN3 [DGVbeta]
DECIPHERSPANXN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPANXN3 
Mutations
ICGC Data PortalSPANXN3 
TCGA Data PortalSPANXN3 
Broad Tumor PortalSPANXN3
OASIS PortalSPANXN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPANXN3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPANXN3
Mutations and Diseases : HGMDSPANXN3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPANXN3
DgiDB (Drug Gene Interaction Database)SPANXN3
DoCM (Curated mutations)SPANXN3
CIViC (Clinical Interpretations of Variants in Cancer)SPANXN3
Cancer3DSPANXN3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300666   
Orphanet
DisGeNETSPANXN3
MedgenSPANXN3
Genetic Testing Registry SPANXN3
NextProtQ5MJ09 [Medical]
GENETestsSPANXN3
Target ValidationSPANXN3
Huge Navigator SPANXN3 [HugePedia]
ClinGenSPANXN3
Clinical trials, drugs, therapy
MyCancerGenomeSPANXN3
Protein Interactions : CTDSPANXN3
Pharm GKB GenePA162404385
PharosQ5MJ09
Clinical trialSPANXN3
Miscellaneous
canSAR (ICR)SPANXN3
HarmonizomeSPANXN3
ARCHS4SPANXN3
DataMed IndexSPANXN3
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPANXN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:53:38 CET 2022

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