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SPANXN4 (SPANX family member N4)

Identity

Alias_namesSPANX family, member N4
Alias_symbol (synonym)SPANX-N4
CT11.9
Other alias
HGNC (Hugo) SPANXN4
LocusID (NCBI) 441525
Atlas_Id 74112
Location Xq27.3  [Link to chromosome band Xq27]
Location_base_pair Starts at 143025918 and ends at 143034280 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPANXN4   33177
Cards
Entrez_Gene (NCBI)SPANXN4  441525  SPANX family member N4
AliasesCT11.9
GeneCards (Weizmann)SPANXN4
Ensembl hg19 (Hinxton)ENSG00000189326 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189326 [Gene_View]  chrX:143025918-143034280 [Contig_View]  SPANXN4 [Vega]
ICGC DataPortalENSG00000189326
TCGA cBioPortalSPANXN4
AceView (NCBI)SPANXN4
Genatlas (Paris)SPANXN4
WikiGenes441525
SOURCE (Princeton)SPANXN4
Genetics Home Reference (NIH)SPANXN4
Genomic and cartography
GoldenPath hg38 (UCSC)SPANXN4  -     chrX:143025918-143034280 +  Xq27.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPANXN4  -     Xq27.3   [Description]    (hg19-Feb_2009)
EnsemblSPANXN4 - Xq27.3 [CytoView hg19]  SPANXN4 - Xq27.3 [CytoView hg38]
Mapping of homologs : NCBISPANXN4 [Mapview hg19]  SPANXN4 [Mapview hg38]
OMIM300667   
Gene and transcription
Genbank (Entrez)BC130503 BC130505 DQ336126 DQ336127 HQ258561
RefSeq transcript (Entrez)NM_001009613
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPANXN4
Cluster EST : UnigeneHs.535082 [ NCBI ]
CGAP (NCI)Hs.535082
Alternative Splicing GalleryENSG00000189326
Gene ExpressionSPANXN4 [ NCBI-GEO ]   SPANXN4 [ EBI - ARRAY_EXPRESS ]   SPANXN4 [ SEEK ]   SPANXN4 [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXN4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441525
GTEX Portal (Tissue expression)SPANXN4
Human Protein AtlasENSG00000189326-SPANXN4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5MJ08   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5MJ08  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5MJ08
Splice isoforms : SwissVarQ5MJ08
PhosPhoSitePlusQ5MJ08
Domains : Interpro (EBI)SPAN-X_fam   
Domain families : Pfam (Sanger)SPAN-X (PF07458)   
Domain families : Pfam (NCBI)pfam07458   
Conserved Domain (NCBI)SPANXN4
DMDM Disease mutations441525
Blocks (Seattle)SPANXN4
SuperfamilyQ5MJ08
Human Protein Atlas [tissue]ENSG00000189326-SPANXN4 [tissue]
Peptide AtlasQ5MJ08
HPRD18093
IPIIPI01010894   IPI00456938   
Protein Interaction databases
DIP (DOE-UCLA)Q5MJ08
IntAct (EBI)Q5MJ08
FunCoupENSG00000189326
BioGRIDSPANXN4
STRING (EMBL)SPANXN4
ZODIACSPANXN4
Ontologies - Pathways
QuickGOQ5MJ08
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSPANXN4
Atlas of Cancer Signalling NetworkSPANXN4
Wikipedia pathwaysSPANXN4
Orthology - Evolution
OrthoDB441525
GeneTree (enSembl)ENSG00000189326
Phylogenetic Trees/Animal Genes : TreeFamSPANXN4
HOVERGENQ5MJ08
HOGENOMQ5MJ08
Homologs : HomoloGeneSPANXN4
Homology/Alignments : Family Browser (UCSC)SPANXN4
Gene fusions - Rearrangements
Tumor Fusion PortalSPANXN4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXN4
dbVarSPANXN4
ClinVarSPANXN4
1000_GenomesSPANXN4 
Exome Variant ServerSPANXN4
ExAC (Exome Aggregation Consortium)ENSG00000189326
GNOMAD BrowserENSG00000189326
Genetic variants : HAPMAP441525
Genomic Variants (DGV)SPANXN4 [DGVbeta]
DECIPHERSPANXN4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPANXN4 
Mutations
ICGC Data PortalSPANXN4 
TCGA Data PortalSPANXN4 
Broad Tumor PortalSPANXN4
OASIS PortalSPANXN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPANXN4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPANXN4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SPANXN4
DgiDB (Drug Gene Interaction Database)SPANXN4
DoCM (Curated mutations)SPANXN4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPANXN4 (select a term)
intoGenSPANXN4
Cancer3DSPANXN4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300667   
Orphanet
DisGeNETSPANXN4
MedgenSPANXN4
Genetic Testing Registry SPANXN4
NextProtQ5MJ08 [Medical]
TSGene441525
GENETestsSPANXN4
Target ValidationSPANXN4
Huge Navigator SPANXN4 [HugePedia]
snp3D : Map Gene to Disease441525
BioCentury BCIQSPANXN4
ClinGenSPANXN4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441525
Chemical/Pharm GKB GenePA162404394
Clinical trialSPANXN4
Miscellaneous
canSAR (ICR)SPANXN4 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPANXN4
EVEXSPANXN4
GoPubMedSPANXN4
iHOPSPANXN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:42 CET 2017

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