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SPANXN4 (SPANX family member N4)

Identity

Alias (NCBI)CT11.9
HGNC (Hugo) SPANXN4
HGNC Alias symbSPANX-N4
CT11.9
HGNC Alias namecancer/testis antigen family 11, member 9
HGNC Previous nameSPANX family, member N4
LocusID (NCBI) 441525
Atlas_Id 74112
Location Xq27.3  [Link to chromosome band Xq27]
Location_base_pair Starts at 143025928 and ends at 143034280 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SPANXN4   33177
Cards
Entrez_Gene (NCBI)SPANXN4    SPANX family member N4
AliasesCT11.9
GeneCards (Weizmann)SPANXN4
Ensembl hg19 (Hinxton)ENSG00000189326 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189326 [Gene_View]  ENSG00000189326 [Sequence]  chrX:143025928-143034280 [Contig_View]  SPANXN4 [Vega]
ICGC DataPortalENSG00000189326
TCGA cBioPortalSPANXN4
AceView (NCBI)SPANXN4
Genatlas (Paris)SPANXN4
SOURCE (Princeton)SPANXN4
Genetics Home Reference (NIH)SPANXN4
Genomic and cartography
GoldenPath hg38 (UCSC)SPANXN4  -     chrX:143025928-143034280 +  Xq27.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPANXN4  -     Xq27.3   [Description]    (hg19-Feb_2009)
GoldenPathSPANXN4 - Xq27.3 [CytoView hg19]  SPANXN4 - Xq27.3 [CytoView hg38]
ImmunoBaseENSG00000189326
Genome Data Viewer NCBISPANXN4 [Mapview hg19]  
OMIM300667   
Gene and transcription
Genbank (Entrez)BC130503 BC130505 DQ336126 DQ336127
RefSeq transcript (Entrez)NM_001009613
Consensus coding sequences : CCDS (NCBI)SPANXN4
Gene ExpressionSPANXN4 [ NCBI-GEO ]   SPANXN4 [ EBI - ARRAY_EXPRESS ]   SPANXN4 [ SEEK ]   SPANXN4 [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXN4 [ Firebrowse - Broad ]
GenevisibleExpression of SPANXN4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441525
GTEX Portal (Tissue expression)SPANXN4
Human Protein AtlasENSG00000189326-SPANXN4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5MJ08   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5MJ08  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5MJ08
PhosPhoSitePlusQ5MJ08
Domains : Interpro (EBI)SPAN-X_fam   
Domain families : Pfam (Sanger)SPAN-X (PF07458)   
Domain families : Pfam (NCBI)pfam07458   
Conserved Domain (NCBI)SPANXN4
SuperfamilyQ5MJ08
AlphaFold pdb e-kbQ5MJ08   
Human Protein Atlas [tissue]ENSG00000189326-SPANXN4 [tissue]
HPRD18093
Protein Interaction databases
DIP (DOE-UCLA)Q5MJ08
IntAct (EBI)Q5MJ08
BioGRIDSPANXN4
STRING (EMBL)SPANXN4
ZODIACSPANXN4
Ontologies - Pathways
QuickGOQ5MJ08
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSPANXN4
Atlas of Cancer Signalling NetworkSPANXN4
Wikipedia pathwaysSPANXN4
Orthology - Evolution
OrthoDB441525
GeneTree (enSembl)ENSG00000189326
Phylogenetic Trees/Animal Genes : TreeFamSPANXN4
Homologs : HomoloGeneSPANXN4
Homology/Alignments : Family Browser (UCSC)SPANXN4
Gene fusions - Rearrangements
Fusion : QuiverSPANXN4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXN4
dbVarSPANXN4
ClinVarSPANXN4
MonarchSPANXN4
1000_GenomesSPANXN4 
Exome Variant ServerSPANXN4
GNOMAD BrowserENSG00000189326
Varsome BrowserSPANXN4
ACMGSPANXN4 variants
VarityQ5MJ08
Genomic Variants (DGV)SPANXN4 [DGVbeta]
DECIPHERSPANXN4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPANXN4 
Mutations
ICGC Data PortalSPANXN4 
TCGA Data PortalSPANXN4 
Broad Tumor PortalSPANXN4
OASIS PortalSPANXN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPANXN4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSPANXN4
Mutations and Diseases : HGMDSPANXN4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSPANXN4
DgiDB (Drug Gene Interaction Database)SPANXN4
DoCM (Curated mutations)SPANXN4
CIViC (Clinical Interpretations of Variants in Cancer)SPANXN4
Cancer3DSPANXN4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300667   
Orphanet
DisGeNETSPANXN4
MedgenSPANXN4
Genetic Testing Registry SPANXN4
NextProtQ5MJ08 [Medical]
GENETestsSPANXN4
Target ValidationSPANXN4
Huge Navigator SPANXN4 [HugePedia]
ClinGenSPANXN4
Clinical trials, drugs, therapy
MyCancerGenomeSPANXN4
Protein Interactions : CTDSPANXN4
Pharm GKB GenePA162404394
PharosQ5MJ08
Clinical trialSPANXN4
Miscellaneous
canSAR (ICR)SPANXN4
HarmonizomeSPANXN4
ARCHS4SPANXN4
DataMed IndexSPANXN4
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSPANXN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 19:27:18 CET 2022

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