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SPANXN5 (SPANX family member N5)

Identity

Alias_namesSPANX family, member N5
Alias_symbol (synonym)SPANX-N5
CT11.10
Other alias
HGNC (Hugo) SPANXN5
LocusID (NCBI) 494197
Atlas_Id 74113
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 52796146 and ends at 52797348 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPANXN5   33178
Cards
Entrez_Gene (NCBI)SPANXN5  494197  SPANX family member N5
AliasesCT11.10; SPANX-N5
GeneCards (Weizmann)SPANXN5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:52796146-52797348 [Contig_View]  SPANXN5 [Vega]
TCGA cBioPortalSPANXN5
AceView (NCBI)SPANXN5
Genatlas (Paris)SPANXN5
WikiGenes494197
SOURCE (Princeton)SPANXN5
Genetics Home Reference (NIH)SPANXN5
Genomic and cartography
GoldenPath hg38 (UCSC)SPANXN5  -     chrX:52796146-52797348 -  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPANXN5  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblSPANXN5 - Xp11.22 [CytoView hg19]  SPANXN5 - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBISPANXN5 [Mapview hg19]  SPANXN5 [Mapview hg38]
OMIM300668   
Gene and transcription
Genbank (Entrez)AL039107 BC146364 BC156577
RefSeq transcript (Entrez)NM_001009616
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPANXN5
Cluster EST : UnigeneHs.535218 [ NCBI ]
CGAP (NCI)Hs.535218
Gene ExpressionSPANXN5 [ NCBI-GEO ]   SPANXN5 [ EBI - ARRAY_EXPRESS ]   SPANXN5 [ SEEK ]   SPANXN5 [ MEM ]
Gene Expression Viewer (FireBrowse)SPANXN5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)494197
GTEX Portal (Tissue expression)SPANXN5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5MJ07   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5MJ07  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5MJ07
Splice isoforms : SwissVarQ5MJ07
PhosPhoSitePlusQ5MJ07
Domains : Interpro (EBI)SPAN-X_fam   
Domain families : Pfam (Sanger)SPAN-X (PF07458)   
Domain families : Pfam (NCBI)pfam07458   
Conserved Domain (NCBI)SPANXN5
DMDM Disease mutations494197
Blocks (Seattle)SPANXN5
SuperfamilyQ5MJ07
Peptide AtlasQ5MJ07
HPRD18094
IPIIPI00549213   
Protein Interaction databases
DIP (DOE-UCLA)Q5MJ07
IntAct (EBI)Q5MJ07
BioGRIDSPANXN5
STRING (EMBL)SPANXN5
ZODIACSPANXN5
Ontologies - Pathways
QuickGOQ5MJ07
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSPANXN5
Atlas of Cancer Signalling NetworkSPANXN5
Wikipedia pathwaysSPANXN5
Orthology - Evolution
OrthoDB494197
Phylogenetic Trees/Animal Genes : TreeFamSPANXN5
HOVERGENQ5MJ07
HOGENOMQ5MJ07
Homologs : HomoloGeneSPANXN5
Homology/Alignments : Family Browser (UCSC)SPANXN5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPANXN5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPANXN5
dbVarSPANXN5
ClinVarSPANXN5
1000_GenomesSPANXN5 
Exome Variant ServerSPANXN5
ExAC (Exome Aggregation Consortium)SPANXN5 (select the gene name)
Genetic variants : HAPMAP494197
Genomic Variants (DGV)SPANXN5 [DGVbeta]
DECIPHERSPANXN5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPANXN5 
Mutations
ICGC Data PortalSPANXN5 
TCGA Data PortalSPANXN5 
Broad Tumor PortalSPANXN5
OASIS PortalSPANXN5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPANXN5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPANXN5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPANXN5
DgiDB (Drug Gene Interaction Database)SPANXN5
DoCM (Curated mutations)SPANXN5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPANXN5 (select a term)
intoGenSPANXN5
Cancer3DSPANXN5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300668   
Orphanet
MedgenSPANXN5
Genetic Testing Registry SPANXN5
NextProtQ5MJ07 [Medical]
TSGene494197
GENETestsSPANXN5
Target ValidationSPANXN5
Huge Navigator SPANXN5 [HugePedia]
snp3D : Map Gene to Disease494197
BioCentury BCIQSPANXN5
ClinGenSPANXN5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD494197
Chemical/Pharm GKB GenePA162404403
Clinical trialSPANXN5
Miscellaneous
canSAR (ICR)SPANXN5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPANXN5
EVEXSPANXN5
GoPubMedSPANXN5
iHOPSPANXN5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:43:45 CEST 2017

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